>SSI125 (SSI125Q) /CSM/SS/SSI1-B/SSI125Q.Seq.d/
XXXXXXXXXXCAAAAGATGTAGAGGATATGTTAAGAAAATTTGATTCAAATGGTGATGGT
AATATTACATTTGATGAAGCTGTAAAACGTTTGAAGGAAACCGGTTCAAAAGATCCATTA
CGTGCTGCCTCTTCAATGTTTATTTCTCTTGATAAGGATAAGGATGGAATTATTTCAATA
AAAGAGATTCATGGCCATAAGGCTGATGTTGCTGCAAAGAAATTGCAAAAGGCAATTAAC
AACATCTGTAACAACTTCTTGAAAGGCTATGACACTGATAAGGATGGAAGGATCTCATGG
GATGAAGTATGCAATTGGGTAAATAAAAACAATCCAGATGCAATTGCTCCACTTATGATT
GTTGAAAATTTCTTTAGTGAATTGGATAAAGATAATGACAGATTCGTAACCAAGTGTGAA
CTTCAGGAGTACGTTACTAAATACAAAAGTCTCCCAGAACAATAAATAATTTATTGTTCA
AATTCAATAATTATTAATCAACATTTATAATTTTCATTTTTAAAAAAATTTAAATAAATA
AATAAATAAAAAATAATCTTTTAAAAATAAAAAA

---KDVEDMLRKFDSNGDGNITFDEAVKRLKETGSKDPLRAASSMFISLDKDKDGIISIK
EIHGHKADVAAKKLQKAINNICNNFLKGYDTDKDGRISWDEVCNWVNKNNPDAIAPLMIV
ENFFSELDKDNDRFVTKCELQEYVTKYKSLPEQ*iiycsnsiiinqhl*fsflkkfk*in
k*kiif*k*k

Frame A:
---krcrgyvkki*fkw*w*yyi**scktfegnrfkrsitcclfnvyfs**g*gwnyfnk
rdswp*g*ccckeiakgn*qhl*qllerl*h**gwkdlmg*smqlgk*kqsrcncstydc
*kfl**ig*r**qirnqv*tsgvry*iqksprtinnllfkfnny*stfiififkki*ink
*iknnllkik


Frame B:
---KDVEDMLRKFDSNGDGNITFDEAVKRLKETGSKDPLRAASSMFISLDKDKDGIISIK
EIHGHKADVAAKKLQKAINNICNNFLKGYDTDKDGRISWDEVCNWVNKNNPDAIAPLMIV
ENFFSELDKDNDRFVTKCELQEYVTKYKSLPEQ*iiycsnsiiinqhl*fsflkkfk*in
k*kiif*k*k


Frame C:
---km*ric*enliqmvmvilhlmkl*nv*rkpvqkihyvlplqclfllirirmelfq*k
rfmairlmllqrnckrqlttsvtts*kamtlirmegshgmkyaig*iktiqmqllhl*ll
kislvnwikimtds*psvnfrstllntkvsqnnk*fivqiq*lliniynfhf*knlnk*i
nkk*sfknkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM673 (SSM673Q) /CSM/SS/SSM6-D/SSM673Q.Seq.d/                        932   0.0
SSM417 (SSM417Q) /CSM/SS/SSM4-A/SSM417Q.Seq.d/                        932   0.0
SSM408 (SSM408Q) /CSM/SS/SSM4-A/SSM408Q.Seq.d/                        932   0.0
SSM376 (SSM376Q) /CSM/SS/SSM3-D/SSM376Q.Seq.d/                        932   0.0
SSM294 (SSM294Q) /CSM/SS/SSM2-D/SSM294Q.Seq.d/                        932   0.0
SSL192 (SSL192Q) /CSM/SS/SSL1-D/SSL192Q.Seq.d/                        932   0.0
SSL187 (SSL187Q) /CSM/SS/SSL1-D/SSL187Q.Seq.d/                        932   0.0
SSK850 (SSK850Q) /CSM/SS/SSK8-C/SSK850Q.Seq.d/                        932   0.0
SSK751 (SSK751Q) /CSM/SS/SSK7-C/SSK751Q.Seq.d/                        932   0.0
SSK729 (SSK729Q) /CSM/SS/SSK7-B/SSK729Q.Seq.d/                        932   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

X82784|X82784.1 D.discoideum mRNA for calcium binding protein.   932  0.0  1
AC116987|AC116987.2 Dictyostelium discoideum chromosome 2 map 3527441-3568052 strain AX4, complete sequence.   910  0.0  1
BQ875038|BQ875038.1 QGI6P19.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGI6P19, mRNA sequence.    42  0.026  2
AC139135|AC139135.5 Mus musculus chromosome 9, clone RP24-360E17, complete sequence.    46  0.47  1
AC114604|AC114604.3 Mus musculus clone RP23-367L9, WORKING DRAFT SEQUENCE, 5 ordered pieces.    46  1.2  2
BH898487|BH898487.1 MB61p8A12 Mission Bay (San Diego, CA) uncultured virus community uncultured marine virus genomic clone MB61p8A12, DNA sequence.    44  1.9  1
AC110201|AC110201.3 Mus musculus clone RP23-214G22, WORKING DRAFT SEQUENCE, 12 unordered pieces.    44  1.9  1
AL929113|AL929113.9 Mouse DNA sequence from clone RP23-424D23 on chromosome 2.    44  1.9  1
AL929352|AL929352.1 Plasmodium falciparum strain 3D7, chromosome 5, segment 2/4.    38  3.3  4
BX546481|BX546481.1 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone  DKEY-60J4.    38  3.7  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54653) RecName: Full=Calcium-binding protein 2;  &S62881(S6288...    79   7e-14
(Q869S9) RecName: Full=Calcium-binding protein E; AltName: Full=...    69   1e-10
AB070447_1(AB070447|pid:none) Dictyostelium discoideum cbpE mRNA...    69   1e-10
(Q966Q9) RecName: Full=Calcium-binding protein H; AltName: Full=...    68   2e-10
AJ297597_1(AJ297597|pid:none) Dictyostelium discoideum mRNA for ...    65   1e-09
(Q54RF4) RecName: Full=Calcium-binding protein 4a;                     65   1e-09
(P09485) RecName: Full=Calcium-binding protein LPS1-alpha;             57   3e-07
CR940353_624(CR940353|pid:none) Theileria annulata strain Ankara...    56   8e-07
EF523472_1(EF523472|pid:none) Synthetic construct putative aller...    55   1e-06
(O64943) RecName: Full=Polcalcin Jun o 2; AltName: Full=Calcium-...    55   2e-06

 psg: 0.75  gvh: 0.27  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 28.0 %: cytoplasmic
	 12.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for SSI125 is nuc

>SSI125Z.Seq
----------CAAAAGATGTAGAGGATATGTTAAGAAAATTTGATTCAAATGGTGATGGT
AATATTACATTTGATGAAGCTGTAAAACGTTTGAAGGAAACCGGTTCAAAAGATCCATTA
CGTGCTGCCTCTTCAATGTTTATTTCTCTTGATAAGGATAAGGATGGAATTATTTCAATA
AAAGAGATTCATGGCCATAAGGCTGATGTTGCTGCAAAGAAATTGCAAAAGGCAATTAAC
AACATCTGTAACAACTTCTTGAAAGGCTATGACACTGATAAGGATGGAAGGATCTCATGG
GATGAAGTATGCAATTGGGTAAATAAAAACAATCCAGATGCAATTGCTCCACTTATGATT
GTTGAAAATTTCTTTAGTGAATTGGATAAAGATAATGACAGATTCGTAACCAAGTGTGAA
CTTCAGGAGTACGTTACTAAATACAAAAGTCTCCCAGAACAATAAATAATTTATTGTTCA
AATTCAATAATTATTAATCAACATTTATAATTTTCATTTTTAAAAAAATTTAAATAAATA
AATAAATAAAAAATAATCTTTTAAAAATAAAAAA