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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSI119
Library SS
(Link to library)
Clone ID SSI119
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U02098-1
Original site URL
Representative seq. ID SSI119E
(Link to Original site)
Representative DNA sequence 
>SSI119 (SSI119Q) /CSM/SS/SSI1-A/SSI119Q.Seq.d/
TAATTAAACAAAACAAACAAACAAAAAACTAAACTAAATATTTAAAATGTCAACATCATC
AGTCCCAAGTTTAACTTATTTCCAAGGTCGTGGATTAGGTCAATTCTCTCGTGTTTTATT
AAGTTATCTTGGAATTCCATCTGAAAATCTTACAGTTACTGAAATTTCAGATGCCCTTCG
TGCAACTCTTCCATATGGTCAATTACCAATTTANCNAGATGGTGATTTTGTTCTTACACA
ATCATCTACCATTGCAAGATACATTGCCAAAAAACACAACTTTATGGAAATCTTGAAGAA
GAATTTTTAGTTGATCAAATTGTTACTGCAATTCACGCTGATATTTTCCCAGCTTTTAAT
AATCCAGTTGTAAGTTTTTTTTTTTTTTTTTTTTTATTAAAAAAAATAAATATTAAACAA
ATAAAACTATTCAAAATTTTTTAGCCAGAAAAACTCCAAAAACTTTATGAAAAATACTTT
GGTTCATTTGAAAAGAAATTACAAGAAACTGGATTCTTAGTTGGATCATCAGTTACATTA
GCTGATTTATATGTTTATGTTGGTTTTGATTACATTAGATTCAGAGGTGAAGCAGCCTTA
TCCAGTGAATTATCAGATGAAAAGTATCCAAAAATCGCTGAATTAAAGAAATTTTTTGAA
TCAAATGAAGGTGTAGCAAAATATATTAAAGAAAGACCAGAAACTAAATTTTAAACTGTT
TTCATCA
sequence update 1999. 4. 9
Translated Amino Acid sequence 
n*tkqtnkkln*IFKMSTSSVPSLTYFQGRGLGQFSRVLLSYLGIPSENLTVTEISDALR
ATLPYGQLPIXXDGDFVLTQSSTIARYIAKKHNFMEILKKNF*liklllqftlifsqlli
iql*vffffffy*kk*ilnk*nyskffsqknsknfmkntlvhlkrnykklds*ldhqlh*
liymfmlvlitldsevkqpypvnyqmksiqksln*rnflnqmkv*qnilkkdqklnfklf
ss
Translated Amino Acid sequence (All Frames) 
Frame A:
*lnktnkqktklni*nvniispkfnlfprswirsilscfiklswnsi*ksysy*nfrcps
cnssiwsitnlxrw*fcsytiiyhckihcqktqlygnleeeflvdqivtaihadifpafn
npvvsffffffllkkinikqiklfkif*peklqklyekyfgsfekklqetgflvgssvtl
adlyvyvgfdyirfrgeaalsselsdekypkiaelkkffesnegvakyikerpetkf*tv
fi


Frame B:
n*tkqtnkkln*IFKMSTSSVPSLTYFQGRGLGQFSRVLLSYLGIPSENLTVTEISDALR
ATLPYGQLPIXXDGDFVLTQSSTIARYIAKKHNFMEILKKNF*liklllqftlifsqlli
iql*vffffffy*kk*ilnk*nyskffsqknsknfmkntlvhlkrnykklds*ldhqlh*
liymfmlvlitldsevkqpypvnyqmksiqksln*rnflnqmkv*qnilkkdqklnfklf
ss


Frame C:
ikqnkqtkn*tkylkcqhhqsqv*liskvvd*vnslvfy*vilefhlkilqllkfqmpfv
qlfhmvnyqfxxmvilflhnhlplqdtlpknttlwks*rrifs*sncycnsr*yfpsf**
ssckfffffffikknky*tnktiqnflarktpktl*kilwfi*keitrnwilswiisyis
*ficlcwf*lh*iqr*ssliq*iir*kvsknr*ikeif*ik*rcskiy*rktrn*ilncf
h
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSI119 (SSI119Q) /CSM/SS/SSI1-A/SSI119Q.Seq.d/                        654   0.0
VSK219 (VSK219Q) /CSM/VS/VSK2-A/VSK219Q.Seq.d/                        587   e-167
VSJ304 (VSJ304Q) /CSM/VS/VSJ3-A/VSJ304Q.Seq.d/                        587   e-167
VSI418 (VSI418Q) /CSM/VS/VSI4-A/VSI418Q.Seq.d/                        587   e-167
VSI291 (VSI291Q) /CSM/VS/VSI2-D/VSI291Q.Seq.d/                        587   e-167
VSG306 (VSG306Q) /CSM/VS/VSG3-A/VSG306Q.Seq.d/                        587   e-167
VSD893 (VSD893Q) /CSM/VS/VSD8-D/VSD893Q.Seq.d/                        587   e-167
VSD725 (VSD725Q) /CSM/VS/VSD7-B/VSD725Q.Seq.d/                        587   e-167
VSD210 (VSD210Q) /CSM/VS/VSD2-A/VSD210Q.Seq.d/                        587   e-167
VSB769 (VSB769Q) /CSM/VS/VSB7-C/VSB769Q.Seq.d/                        587   e-167
own update 2001.11.12
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.   611  0.0  4
BH493101|BH493101.1 BOGEK66TR BOGE Brassica oleracea genomic clone BOGEK66, DNA sequence.    52  0.010  1
BH548669|BH548669.1 BOGGG66TF BOGG Brassica oleracea genomic clone BOGGG66, DNA sequence.    52  0.010  1
BH662095|BH662095.1 BOMKM68TF BO_2_3_KB Brassica oleracea genomic clone BOMKM68, DNA sequence.    50  0.038  1
AP006054|AP006054.1 Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0417E03, WORKING DRAFT SEQUENCE, 1 ordered pieces.    40  0.065  5
AE014821|AE014821.1 Plasmodium falciparum 3D7 chromosome 14 section 6 of 13 of the complete sequence.    38  0.12  6
AQ081636|AQ081636.1 RPCI11-54N17.TJ RPCI-11 Homo sapiens genomic clone RPCI-11-54N17, DNA sequence.    48  0.15  1
AQ082813|AQ082813.1 RPCI11-54N18.TJ RPCI-11 Homo sapiens genomic clone RPCI-11-54N18, genomic survey sequence.    48  0.15  1
AC006651|AC006651.2 Caenorhabditis elegans cosmid H06I04, complete sequence.    42  0.16  3
BX152130|BX152130.1 Danio rerio genomic clone DKEY-113P20, genomic survey sequence.    38  0.21  3
dna update 2003. 7.29
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q556G3) RecName: Full=Putative glutathione S-transferase alpha-...   219   1e-94
(Q86AU1) RecName: Full=Putative glutathione S-transferase alpha-...    70   5e-11
(Q54VI4) RecName: Full=Putative glutathione S-transferase alpha-...    70   9e-11
(Q55FF3) RecName: Full=Putative glutathione S-transferase alpha-...    67   7e-10
(Q54QV7) RecName: Full=Putative glutathione S-transferase alpha-...    65   3e-09
AK341660_1(AK341660|pid:none) Acyrthosiphon pisum ACYPI002679 mR...    55   2e-06
EU131183_1(EU131183|pid:none) Laternula elliptica pi class gluta...    54   4e-06
T21898(T21898) hypothetical protein F37B1.3 - Caenorhabditis ele...    54   5e-06
EU008563_1(EU008563|pid:none) Cyphoma gibbosum glutathione S-tra...    52   1e-05
AY825933_1(AY825933|pid:none) Sarcoptes scabiei type hominis glu...    52   2e-05
protein update 2009. 7. 8
PSORT 

 psg: 0.86  gvh: 0.43  alm: 0.49  top: 0.53  tms: 0.00  mit: 0.39  mip: 0.05
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: mitochondrial
	 24.0 %: cytoplasmic
	 24.0 %: nuclear
	  8.0 %: vacuolar
	  4.0 %: cytoskeletal
	  4.0 %: endoplasmic reticulum
	  4.0 %: peroxisomal

>> prediction for SSI119 is mit
5' end seq. ID SSI119F
5' end seq. 
>SSI119F.Seq
TAATTAAACAAAACAAACAAACAAAAAACTAAACTAAATATTTAAAATGTCAACATCATC
AGTCCCAAGTTTAACTTATTTCCAAGGTCGTGGATTAGGTCAATTCTCTCGTGTTTTATT
AAGTTATCTTGGAATTCCATCTGAAAATCTTACAGTTACTGAAATTTCAGATGCCCTTCG
TGCAACTCTTCCATATGGTCAATTACCAATTTANCNAGATGGTGATTTTGTTCTTACACA
ATCATCTACCATTGCAAGATACATTGCCAAAAAACACAACTTTATGGGTAAAAATCTTGA
AGAAGAATTTTTAGTTGATCAAATTGTTACTGCAATTCACGCTGATATTTTCCCAGCTTT
TAATAATCCAGTTGTAAGTTTTTTTTTTTTTTTTTTTTTATTAAAAAAAATAAATATTAA
----------
Length of 5' end seq. 420
3' end seq. ID SSI119Z
3' end seq. 
>SSI119Z.Seq
----------AAATCTTGAAGAAGAATTTTTAGTTGATCAAATTGTTACTGCAATTCACG
CTGATATTTTCCCAGCTTTTAATAATCCAGTTGTAAGTTTTTTTTTTTTTTTTTTTTTAT
TAAAAAAAATAAATATTAATACTAACAAATAAAACTATTCAAAATTTTTTAGCCAGAAAA
ACTCCAAAAACTTTATGAAAAATACTTTGGTTCATTTGAAAAGAAATTACAAGAAACTGG
ATTCTTAGTTGGATCATCAGTTACATTAGCTGATTTATATGTTTATGTTGGTTTTGATTA
CATTAGATTCAGAGGTGAAGCAGCCTTATCCAGTGAATTATCAGATGAAAAGTATCCAAA
AATCGCTGAATTAAAGAAATTTTTTGAATCAAATGAAGGTGTAGCAAAATATATTAAAGA
AAGACCAGAAACTAAATTTTAAACTGTTTTCATCACCATTAT
Length of 3' end seq. 452
Connected seq. ID SSI119P
Connected seq. 
>SSI119P.Seq
TAATTAAACAAAACAAACAAACAAAAAACTAAACTAAATATTTAAAATGTCAACATCATC
AGTCCCAAGTTTAACTTATTTCCAAGGTCGTGGATTAGGTCAATTCTCTCGTGTTTTATT
AAGTTATCTTGGAATTCCATCTGAAAATCTTACAGTTACTGAAATTTCAGATGCCCTTCG
TGCAACTCTTCCATATGGTCAATTACCAATTTANCNAGATGGTGATTTTGTTCTTACACA
ATCATCTACCATTGCAAGATACATTGCCAAAAAACACAACTTTATGGGTAAAAATCTTGA
AGAAGAATTTTTAGTTGATCAAATTGTTACTGCAATTCACGCTGATATTTTCCCAGCTTT
TAATAATCCAGTTGTAAGTTTTTTTTTTTTTTTTTTTTTATTAAAAAAAATAAATATTAA
----------AAATCTTGAAGAAGAATTTTTAGTTGATCAAATTGTTACTGCAATTCACG
CTGATATTTTCCCAGCTTTTAATAATCCAGTTGTAAGTTTTTTTTTTTTTTTTTTTTTAT
TAAAAAAAATAAATATTAATACTAACAAATAAAACTATTCAAAATTTTTTAGCCAGAAAA
ACTCCAAAAACTTTATGAAAAATACTTTGGTTCATTTGAAAAGAAATTACAAGAAACTGG
ATTCTTAGTTGGATCATCAGTTACATTAGCTGATTTATATGTTTATGTTGGTTTTGATTA
CATTAGATTCAGAGGTGAAGCAGCCTTATCCAGTGAATTATCAGATGAAAAGTATCCAAA
AATCGCTGAATTAAAGAAATTTTTTGAATCAAATGAAGGTGTAGCAAAATATATTAAAGA
AAGACCAGAAACTAAATTTTAAACTGTTTTCATCACCATTAT
Length of connected seq. 872
Full length Seq ID SSI119E
Full length Seq. 
>SSI119E.Seq
TAATTAAACAAAACAAACAAACAAAAAACTAAACTAAATATTTAAAATGTCAACATCATC
AGTCCCAAGTTTAACTTATTTCCAAGGTCGTGGATTAGGTCAATTCTCTCGTGTTTTATT
AAGTTATCTTGGAATTCCATCTGAAAATCTTACAGTTACTGAAATTTCAGATGCCCTTCG
TGCAACTCTTCCATATGGTCAATTACCAATTTANCNAGATGGTGATTTTGTTCTTACACA
ATCATCTACCATTGCAAGATACATTGCCAAAAAACACAACTTTATGGAAATCTTGAAGAA
GAATTTTTAGTTGATCAAATTGTTACTGCAATTCACGCTGATATTTTCCCAGCTTTTAAT
AATCCAGTTGTAAGTTTTTTTTTTTTTTTTTTTTTATTAAAAAAAATAAATATTAAACAA
ATAAAACTATTCAAAATTTTTTAGCCAGAAAAACTCCAAAAACTTTATGAAAAATACTTT
GGTTCATTTGAAAAGAAATTACAAGAAACTGGATTCTTAGTTGGATCATCAGTTACATTA
GCTGATTTATATGTTTATGTTGGTTTTGATTACATTAGATTCAGAGGTGAAGCAGCCTTA
TCCAGTGAATTATCAGATGAAAAGTATCCAAAAATCGCTGAATTAAAGAAATTTTTTGAA
TCAAATGAAGGTGTAGCAAAATATATTAAAGAAAGACCAGAAACTAAATTTTAAACTGTT
TTCATCA
Length of full length seq. 727