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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSI115
Library SS
(Link to library)
Clone ID SSI115
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U05408-1
Original site URL
Representative seq. ID SSI115E
(Link to Original site)
Representative DNA sequence 
>SSI115 (SSI115Q) /CSM/SS/SSI1-A/SSI115Q.Seq.d/
AATATTAAAAAAAAAAAAAAAAAAAAATTAAAAATTGCAACGATCAAAGTTAATTTTTAA
AAGTTTGGATGTAAACTGATTGATTTGTTTTTTTCATTTTAATTAACTTTTTTTAATTTT
AGTATAATGCTTTTTATTCCACAAAGAGACACTTCTTTTTAAAATTATAAAAAAAATGCG
TATTTTTACCCAGAGTGGAGAAAACAGATAAAAAGCTGATATCACCAAAAATTGGTAGTT
CTATTTCTTAATACTATATATATTTTTGGAAAACAAGTATAAATTGCCAGAATAAACATC
CAATAAAATTAAATTTTTAATAAAATAATTTTTTTTTTAAAAAATAAATCATTAAAAAAA
TAATAATATATTTTTTAAACACTCTTTTAAATTTATTTATTTTTAATACAAGTGTTAAGT
AATAGTAATTTTATTGAAAAATAAAAATAATCTATAGTTTTAAAATAAAAATAAATAAAA
AAATAAATAATTTTTTTTTTTTTATTATAGATTAGTGCAGTTTGAATTAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
sequence update 1999. 4.21
Translated Amino Acid sequence 
ilkkkkkkn*klqrsklifksldvn*licffhfn*lflilv*cflfhketllfkiikkmr
iftqsgenr*kaditknw*fyflilyiflenkyklpe*tsnkikflik*fff*kinh*kn
nniffkhsfkfiyf*ykc*vivillknknnl*f*nknk*knk*FFFFYYRLVQFELKKKK
KKKKKKKKKKKK
Translated Amino Acid sequence (All Frames) 
Frame A:
nikkkkkkklkiatikvnf*kfgcklidlffsf*ltffnfsimlfipqrdtsf*nykkna
yfypewrkqiks*yhqklvvlflntiyifgkqv*iariniq*n*ifnkiifflknkslkk
**yif*tlf*iylfliqvlsnsnfiek*k*sivlk*k*ikk*iifffll*isav*ikkkk
kkkkkkkkkkkk


Frame B:
ilkkkkkkn*klqrsklifksldvn*licffhfn*lflilv*cflfhketllfkiikkmr
iftqsgenr*kaditknw*fyflilyiflenkyklpe*tsnkikflik*fff*kinh*kn
nniffkhsfkfiyf*ykc*vivillknknnl*f*nknk*knk*FFFFYYRLVQFELKKKK
KKKKKKKKKKKK


Frame C:
y*kkkkkkikncndqs*flkvwm*td*fvffilinff*f*ynafystkrhfflkl*kkcv
flprvektdkklispkigssis*yyiyfwktsincqnkhpiklnf**nnfffkk*iikki
iiyflntllnlfifntsvk***fy*kikiiysfkikinkkinnffffiid*csln*kkkk
kkkkkkkkkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSI115 (SSI115Q) /CSM/SS/SSI1-A/SSI115Q.Seq.d/                        285   4e-76
VHK739 (VHK739Q) /CSM/VH/VHK7-B/VHK739Q.Seq.d/                         34   2.2
VHJ185 (VHJ185Q) /CSM/VH/VHJ1-D/VHJ185Q.Seq.d/                         34   2.2
VHI521 (VHI521Q) /CSM/VH/VHI5-A/VHI521Q.Seq.d/                         34   2.2
VHF578 (VHF578Q) /CSM/VH/VHF5-D/VHF578Q.Seq.d/                         34   2.2
VHB501 (VHB501Q) /CSM/VH/VHB5-A/VHB501Q.Seq.d/                         34   2.2
VHA621 (VHA621Q) /CSM/VH/VHA6-A/VHA621Q.Seq.d/                         34   2.2
VFA780 (VFA780Q) /CSM/VF/VFA7-D/VFA780Q.Seq.d/                         34   2.2
SLK826 (SLK826Q) /CSM/SL/SLK8-B/SLK826Q.Seq.d/                         34   2.2
CHO639 (CHO639Q) /CSM/CH/CHO6-B/CHO639Q.Seq.d/                         34   2.2
own update 2004. 6. 1
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC046129|AC046129.17 Homo sapiens 12 BAC RP11-150C16 (Roswell Park Cancer Institute Human BAC Library) complete sequence.    44  1.6  4
AC101646|AC101646.1 Mus musculus clone RP23-200G24, LOW-PASS SEQUENCE SAMPLING.    36  1.9  2
AC016101|AC016101.4 Homo sapiens clone RP11-26G8, WORKING DRAFT SEQUENCE, 19 unordered pieces.    44  1.9  1
AC068305|AC068305.30 Homo sapiens 12 BAC RP11-557F20 (Roswell Park Cancer Institute Human BAC Library) complete sequence.    44  1.9  1
BG482047|BG482047.1 602527926F1 NIH_MGC_21 Homo sapiens cDNA clone IMAGE:4651351 5', mRNA sequence.    44  1.9  1
BI116187|BI116187.1 602866110F1 NIH_MGC_7 Homo sapiens cDNA clone IMAGE:5014611 5', mRNA sequence.    44  1.9  1
BG770215|BG770215.1 602744990F1 NIH_MGC_49 Homo sapiens cDNA clone IMAGE:4877903 5', mRNA sequence.    44  1.9  1
AW938884|AW938884.1 PM0-DT0066-310100-001-b04 DT0066 Homo sapiens cDNA, mRNA sequence.    44  1.9  1
BM049437|BM049437.1 603624048F1 NIH_MGC_40 Homo sapiens cDNA clone IMAGE:5449978 5', mRNA sequence.    44  1.9  1
BD183383|BD183383.1 Novel genes and proteins encoded by the genes.    44  1.9  1
dna update 2003. 7.29
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR940348_106(CR940348|pid:none) Theileria annulata strain Ankara...    32   9.6
AY382608_3(AY382608|pid:none) Xiphinema americanum mitochondrion...    32   9.6
protein update 2009. 3. 6
PSORT 

 psg: 0.57  gvh: 0.07  alm: 0.64  top: 0.53  tms: 0.00  mit: 0.31  mip: 0.00
 nuc: 1.01  erl: 0.00  erm: 0.80  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 76.0 %: nuclear
	 20.0 %: cytoplasmic
	  4.0 %: mitochondrial

>> prediction for SSI115 is nuc
5' end seq. ID SSI115F
5' end seq. 
>SSI115F.Seq
AATATTAAAAAAAAAAAAAAAAAAAAATTAAAAATTGCAACGATCAAAGTTAATTTTTAA
AAGTTTGGATGTAAACTGATTGATTTGTTTTTTTCATTTTAATTAACTTTTTTTAATTTT
AGTATAATGCTTTTTATTCCACAAAGAGACACTTCTTTTTAAAATTATAAAAAAAATGCG
TATTTTTACCCAGAGTGGAGAAAACAGATAAAAAGCTGATATCACCAAAAATTGGTAGTT
CTATTTCTTAATACTATATATATTTTTGGAAAACAAGTATAAATTGCCAGAATAAACATC
CAATAAAATTAAATTTTTAATAAAATAATTTTTTTTTTAAAAAATAAATCATTAAAAAAA
TAATAATAATAATATATTTTTTAAACACTCTTTTAAATTTATTTATTTTTAATACAAGTG
TTAAGTAATAGTAATTTTATTGAAAAATAAAAATAATCTATAGTTTTAAAATA-------
---
Length of 5' end seq. 473
3' end seq. ID SSI115Z
3' end seq. 
>SSI115Z.Seq
----------TAATATATTTTTTAAACACTCTTTTAAATTTATTTATTTTTAATACAAGT
GTTAAGTAATAGTAATTTTATTGAAAAATAAAAATAATCTATAGTTTTAAAATAAAATAA
ATAAAAAAATAAATAATTTTTTTTTTTTTATTATAGATTAGTGCAGTTTGAATTAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Length of 3' end seq. 217
Connected seq. ID SSI115P
Connected seq. 
>SSI115P.Seq
AATATTAAAAAAAAAAAAAAAAAAAAATTAAAAATTGCAACGATCAAAGTTAATTTTTAA
AAGTTTGGATGTAAACTGATTGATTTGTTTTTTTCATTTTAATTAACTTTTTTTAATTTT
AGTATAATGCTTTTTATTCCACAAAGAGACACTTCTTTTTAAAATTATAAAAAAAATGCG
TATTTTTACCCAGAGTGGAGAAAACAGATAAAAAGCTGATATCACCAAAAATTGGTAGTT
CTATTTCTTAATACTATATATATTTTTGGAAAACAAGTATAAATTGCCAGAATAAACATC
CAATAAAATTAAATTTTTAATAAAATAATTTTTTTTTTAAAAAATAAATCATTAAAAAAA
TAATAATAATAATATATTTTTTAAACACTCTTTTAAATTTATTTATTTTTAATACAAGTG
TTAAGTAATAGTAATTTTATTGAAAAATAAAAATAATCTATAGTTTTAAAATA-------
---TAATATATTTTTTAAACACTCTTTTAAATTTATTTATTTTTAATACAAGTGTTAAGT
AATAGTAATTTTATTGAAAAATAAAAATAATCTATAGTTTTAAAATAAAATAAATAAAAA
AATAAATAATTTTTTTTTTTTTATTATAGATTAGTGCAGTTTGAATTAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Length of connected seq. 690
Full length Seq ID SSI115E
Full length Seq. 
>SSI115E.Seq
AATATTAAAAAAAAAAAAAAAAAAAAATTAAAAATTGCAACGATCAAAGTTAATTTTTAA
AAGTTTGGATGTAAACTGATTGATTTGTTTTTTTCATTTTAATTAACTTTTTTTAATTTT
AGTATAATGCTTTTTATTCCACAAAGAGACACTTCTTTTTAAAATTATAAAAAAAATGCG
TATTTTTACCCAGAGTGGAGAAAACAGATAAAAAGCTGATATCACCAAAAATTGGTAGTT
CTATTTCTTAATACTATATATATTTTTGGAAAACAAGTATAAATTGCCAGAATAAACATC
CAATAAAATTAAATTTTTAATAAAATAATTTTTTTTTTAAAAAATAAATCATTAAAAAAA
TAATAATATATTTTTTAAACACTCTTTTAAATTTATTTATTTTTAATACAAGTGTTAAGT
AATAGTAATTTTATTGAAAAATAAAAATAATCTATAGTTTTAAAATAAAAATAAATAAAA
AAATAAATAATTTTTTTTTTTTTATTATAGATTAGTGCAGTTTGAATTAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Length of full length seq. 578