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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSI113
Library SS
(Link to library)
Clone ID SSI113
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U03801-1
Original site URL
Representative seq. ID SSI113Z
(Link to Original site)
Representative DNA sequence 
>SSI113 (SSI113Q) /CSM/SS/SSI1-A/SSI113Q.Seq.d/
XXXXXXXXXXAAATGCAAATGTTTCAGGAATTAATGGATACTGTTCAGAATTGGTTCAAT
TTGCCGATGATGATTGTGAAAACATTTTATTAAATTCTTATTTAAATGGTGCATGTGATG
GTCCACAATCAAACGGTTATTTCAATCGTTATCTTTGTAATGGAAATGTTGTAAAACGTT
ATAATTGCCCATCTGATTGCCGTAAAGCTTCTGGGGTCAGTGGTTGTGTATTTGATAAAG
AATTAAAAAGTATTTCATCCTGTCCAAATATTAAATCAAAAAATATTCAAGATTTAATTA
AAATTGATGGTAAAGTTGATACTTCAAGTACATCTTCTTCTTCTGGTGCTACTGGTGGTG
GTGGTACTGGAAATAATGGTACCTCAGCAACTGGTGGTAGTGGAGCAACTGGAGCCGCTT
CTGGAAATGGTGGAGCTACATCAAATGCAGGAAATAGTGGAGGTGCCTCAACTACTGGCA
AAAGCAATGCCCAAAAAATATACGTATCTTTCTTCCTTTTAATTAGTTTATCATTATTAA
TTTTAATATTATTTTAAATAAAATAAAAAATAAAAAACTAGTAATATTAAAATTTTAAAA
AAAAAAAAAAAAAAAAAA
sequence update 1997.12.25
Translated Amino Acid sequence 
---NANVSGINGYCSELVQFADDDCENILLNSYLNGACDGPQSNGYFNRYLCNGNVVKRY
NCPSDCRKASGVSGCVFDKELKSISSCPNIKSKNIQDLIKIDGKVDTSSTSSSSGATGGG
GTGNNGTSATGGSGATGAASGNGGATSNAGNSGGASTTGKSNAQKIYVSFFLLISLSLLI
LILF*ik*kikn**y*nfkkkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
---NANVSGINGYCSELVQFADDDCENILLNSYLNGACDGPQSNGYFNRYLCNGNVVKRY
NCPSDCRKASGVSGCVFDKELKSISSCPNIKSKNIQDLIKIDGKVDTSSTSSSSGATGGG
GTGNNGTSATGGSGATGAASGNGGATSNAGNSGGASTTGKSNAQKIYVSFFLLISLSLLI
LILF*ik*kikn**y*nfkkkkkkk


Frame B:
---mqmfqelmdtvqnwfnlpmmivktfy*ili*mvhvmvhnqtvisivifvmeml*nvi
iahliavkllgsvvvylikn*kvfhpvqilnqkifki*lklmvklilqvhllllvllvvv
vleimvpqqlvvveqlepllemvelhqmqeivevpqllakampkkytylssf*lvyhy*f
*yyfk*nkk*ktsnikilkkkkkkk


Frame C:
---ckcfrn*wilfrigsicr**l*khfikflfkwcm*wstikrlfqslsl*wkccktl*
lpi*lp*sfwgqwlci**rikkyfilsky*ikkysrfn*n*w*s*yfkyifffwcywwww
ywk*wylsnww*wsnwsrfwkwwsyikcrk*wrclnywqkqcpkniriflpfn*fiiinf
niilnkiknkklvilkf*kkkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSI113 (SSI113Q) /CSM/SS/SSI1-A/SSI113Q.Seq.d/                       1078   0.0
VFD728 (VFD728Q) /CSM/VF/VFD7-B/VFD728Q.Seq.d/                       1070   0.0
SSE208 (SSE208Q) /CSM/SS/SSE2-A/SSE208Q.Seq.d/                       1070   0.0
SSA380 (SSA380Q) /CSM/SS/SSA3-D/SSA380Q.Seq.d/                       1063   0.0
SLK691 (SLK691Q) /CSM/SL/SLK6-D/SLK691Q.Seq.d/                       1021   0.0
SSL642 (SSL642Q) /CSM/SS/SSL6-B/SSL642Q.Seq.d/                       1003   0.0
SSK491 (SSK491Q) /CSM/SS/SSK4-D/SSK491Q.Seq.d/                        932   0.0
SSD150 (SSD150Q) /CSM/SS/SSD1-C/SSD150Q.Seq.d/                        924   0.0
SSA819 (SSA819Q) /CSM/SS/SSA8-A/SSA819Q.Seq.d/                        872   0.0
SLA581 (SLA581Q) /CSM/SL/SLA5-D/SLA581Q.Seq.d/                        761   0.0
own update 2001. 6.15
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.  1070  0.0  1
AC116989|AC116989.2 Dictyostelium discoideum chromosome 2 map complement(3527391-3470188) strain AX4, complete sequence.    44  0.002  5
AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence.    36  0.005  9
AZ543373|AZ543373.1 ENTEN01TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    40  0.010  2
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    48  0.017  10
AP001835|AP001835.4 Homo sapiens genomic DNA, chromosome 11q clone:RP11-668M17, complete sequences.    44  0.033  7
AL935202|AL935202.7 Zebrafish DNA sequence from clone CH211-197E11.    52  0.10  2
AL250244|AL250244.1 Tetraodon nigroviridis genome survey sequence T7 end of clone 037C13 of library G from Tetraodon nigroviridis.    48  0.13  1
BX005302|BX005302.5 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEY-237I15.    36  0.24  9
AC116979|AC116979.2 Dictyostelium discoideum chromosome 2 map 6357117-6445670 strain AX4, complete sequence.    34  0.25  6
dna update 2003. 7.29
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116984_51(AC116984|pid:none) Dictyostelium discoideum chromoso...   217   2e-55
AE014187_405(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    35   2.2
CP000252_1007(CP000252|pid:none) Syntrophus aciditrophicus SB, c...    35   2.2
AE014186_433(AE014186|pid:none) Plasmodium falciparum 3D7 chromo...    33   4.9
AE015928_3096(AE015928|pid:none) Bacteroides thetaiotaomicron VP...    33   6.3
AE014187_705(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    33   6.4
protein update 2009. 6.13
PSORT 

 psg: 0.80  gvh: 0.50  alm: 0.14  top: 0.40  tms: 0.07  mit: 0.14  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.03  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 1.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 20.0 %: cytoplasmic
	 20.0 %: nuclear
	 16.0 %: vesicles of secretory system
	 12.0 %: plasma membrane
	  8.0 %: Golgi
	  8.0 %: endoplasmic reticulum
	  4.0 %: extracellular, including cell wall
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vacuolar

>> prediction for SSI113 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSI113Z
3' end seq. 
>SSI113Z.Seq
----------AAATGCAAATGTTTCAGGAATTAATGGATACTGTTCAGAATTGGTTCAAT
TTGCCGATGATGATTGTGAAAACATTTTATTAAATTCTTATTTAAATGGTGCATGTGATG
GTCCACAATCAAACGGTTATTTCAATCGTTATCTTTGTAATGGAAATGTTGTAAAACGTT
ATAATTGCCCATCTGATTGCCGTAAAGCTTCTGGGGTCAGTGGTTGTGTATTTGATAAAG
AATTAAAAAGTATTTCATCCTGTCCAAATATTAAATCAAAAAATATTCAAGATTTAATTA
AAATTGATGGTAAAGTTGATACTTCAAGTACATCTTCTTCTTCTGGTGCTACTGGTGGTG
GTGGTACTGGAAATAATGGTACCTCAGCAACTGGTGGTAGTGGAGCAACTGGAGCCGCTT
CTGGAAATGGTGGAGCTACATCAAATGCAGGAAATAGTGGAGGTGCCTCAACTACTGGCA
AAAGCAATGCCCAAAAAATATACGTATCTTTCTTCCTTTTAATTAGTTTATCATTATTAA
TTTTAATATTATTTTAAATAAAATAAAAAATAAAAAACTAGTAATATTAAAATTTTAAAA
AAAAAAAAAAAAAAAAAA
Length of 3' end seq. 608
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -