>SSI103 (SSI103Q) /CSM/SS/SSI1-A/SSI103Q.Seq.d/
XXXXXXXXXXGAACAAGAAAAATTAGAAGAAGAGGAAGAGGAAGAAGAAGAGGAAAAGGA
TGAACCAAAAATTGAAGAAGAAGCCGATAGTTTTTGTTTCTTACCATTCACTCCATCACC
ATTTTCACCATTTTCAATTCAAAATAATGTACCAGCATCAGTTCAAGTTCCATCAGAAAT
TTCAAATTCATTCAATATTCCACCAGTTGCTGAACAACAACAACAAGAAAAAATAAATAA
CAACACAAGTAATAATTCAAATAATTATCAATTACCACCATTACCAGTAGTTGAACAAGA
ACAAATTATTGAAAATGTTCAACCACAAGTTGAAGAATTACCAAAACTTGAAGAATTATC
AGTAAATGGTGAACAAGAAGATATTAGACGTAAATGTATTGGTACATTGGTTTCAATGGG
TTTCAGTAATACTCCAAATATTATTGAAATTATCAAAAGATATAATTTCAATATCAATGA
AATCATTGACCATTTATTAAGTAATCAAGAACAATAAAAAAGATCTTAGAAAATCTTTTT
CTTTTTTTTTTTGTTTAGTTTCCTTTTTTTAAAAATTAATAAATAAAATTTTATATTATA
AAATCAA

---QEKLEEEEEEEEEEKDEPKIEEEADSFCFLPFTPSPFSPFSIQNNVPASVQVPSEIS
NSFNIPPVAEQQQQEKINNNTSNNSNNYQLPPLPVVEQEQIIENVQPQVEELPKLEELSV
NGEQEDIRRKCIGTLVSMGFSNTPNIIEIIKRYNFNINEIIDHLLSNQEQ*krs*kifff
fflfsflflkink*nfil*nq

Frame A:
---nkkn*kkrkrkkkrkrmnqklkkkpivfvsyhslhhhfhhfqfkimyqhqfkfhqkf
qihsifhqllnnnnkkk*ittqviiqiiinyhhyq*lnknkllkmfnhklknyqnlknyq
*mvnkkildvnvlvhwfqwvsvilqillklskdiisismksltiy*viknnkkdlrksfs
fffclvsff*klinkilyyki


Frame B:
---trkirrrgrgrrrgkg*tkn*rrsr*flfltihsitiftifnsk*ctsissssirnf
kfiqystsc*ttttrknk*qhk**fk*lsittitss*trtny*kcstts*ritkt*riis
kw*trry*t*mywyigfngfq*yskyy*nyqki*fqyq*nh*pfik*srtikkilenlfl
fffv*fpffkn**ikfyiiks


Frame C:
---QEKLEEEEEEEEEEKDEPKIEEEADSFCFLPFTPSPFSPFSIQNNVPASVQVPSEIS
NSFNIPPVAEQQQQEKINNNTSNNSNNYQLPPLPVVEQEQIIENVQPQVEELPKLEELSV
NGEQEDIRRKCIGTLVSMGFSNTPNIIEIIKRYNFNINEIIDHLLSNQEQ*krs*kifff
fflfsflflkink*nfil*nq

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM404 (SSM404Q) /CSM/SS/SSM4-A/SSM404Q.Seq.d/                        896   0.0
SSM351 (SSM351Q) /CSM/SS/SSM3-C/SSM351Q.Seq.d/                        896   0.0
SSK110 (SSK110Q) /CSM/SS/SSK1-A/SSK110Q.Seq.d/                        896   0.0
SSI103 (SSI103Q) /CSM/SS/SSI1-A/SSI103Q.Seq.d/                        896   0.0
SSH104 (SSH104Q) /CSM/SS/SSH1-A/SSH104Q.Seq.d/                        896   0.0
SSE569 (SSE569Q) /CSM/SS/SSE5-C/SSE569Q.Seq.d/                        896   0.0
SSA184 (SSA184Q) /CSM/SS/SSA1-D/SSA184Q.Seq.d/                        896   0.0
SLA424 (SLA424Q) /CSM/SL/SLA4-A/SLA424Q.Seq.d/                        896   0.0
SSD283 (SSD283Q) /CSM/SS/SSD2-D/SSD283Q.Seq.d/                        890   0.0
SSM280 (SSM280Q) /CSM/SS/SSM2-D/SSM280Q.Seq.d/                        882   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC117076|AC117076.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence.    36  1e-07  10
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    48  7e-07  8
AL929355|AL929355.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 1/5.    46  8e-06  11
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence.    38  2e-04  7
AC117072|AC117072.2 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence.    40  6e-04  7
AC091608|AC091608.2 Homo sapiens chromosome 1 clone RP11-97O14, complete sequence.    38  0.003  7
AE014826|AE014826.1 Plasmodium falciparum 3D7 chromosome 14 section 11 of 13 of the complete sequence.    34  0.003  10
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    40  0.004  6
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    42  0.004  6
AF072897|AF072897.1 Arabidopsis thaliana BAC T8A17 chromosome IV, complete sequence.    44  0.004  4

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP001407_4621(CP001407|pid:none) Bacillus cereus 03BB102, comple...    34   3.6
CU633900_565(CU633900|pid:none) Podospora anserina genomic DNA c...    34   3.6
EU016667_18(EU016667|pid:none) Uncultured marine microorganism H...    34   3.6
CP001349_1344(CP001349|pid:none) Methylobacterium nodulans ORS 2...    33   4.7
AC116982_8(AC116982|pid:none) Dictyostelium discoideum chromosom...    33   4.7
CP000001_4398(CP000001|pid:none) Bacillus cereus E33L, complete ...    33   8.0
CP000393_3125(CP000393|pid:none) Trichodesmium erythraeum IMS101...    33   8.0

 psg: 0.75  gvh: 0.40  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 24.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: endoplasmic reticulum

>> prediction for SSI103 is cyt

>SSI103Z.Seq
----------GAACAAGAAAAATTAGAAGAAGAGGAAGAGGAAGAAGAAGAGGAAAAGGA
TGAACCAAAAATTGAAGAAGAAGCCGATAGTTTTTGTTTCTTACCATTCACTCCATCACC
ATTTTCACCATTTTCAATTCAAAATAATGTACCAGCATCAGTTCAAGTTCCATCAGAAAT
TTCAAATTCATTCAATATTCCACCAGTTGCTGAACAACAACAACAAGAAAAAATAAATAA
CAACACAAGTAATAATTCAAATAATTATCAATTACCACCATTACCAGTAGTTGAACAAGA
ACAAATTATTGAAAATGTTCAACCACAAGTTGAAGAATTACCAAAACTTGAAGAATTATC
AGTAAATGGTGAACAAGAAGATATTAGACGTAAATGTATTGGTACATTGGTTTCAATGGG
TTTCAGTAATACTCCAAATATTATTGAAATTATCAAAAGATATAATTTCAATATCAATGA
AATCATTGACCATTTATTAAGTAATCAAGAACAATAAAAAAGATCTTAGAAAATCTTTTT
CTTTTTTTTTTTGTTTAGTTTCCTTTTTTTAAAAATTAATAAATAAAATTTTATATTATA
AAATCAA