SSH895
Library SS
(Link to library)
Clone ID SSH895
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U07719-1
Original site URL
Representative seq. ID SSH895Z
(Link to Original site)
Representative DNA sequence
>SSH895 (SSH895Q) /CSM/SS/SSH8-D/SSH895Q.Seq.d/
XXXXXXXXXXGATTGTGATCCATATGATGGCCAATGTGGTGGTGGTGATCCATATACAGT
TTATGAATATTTTAGTCAAGTTGGTGGTGTTAGTACTAATGCTCAATATCCATATACTGC
TACAGATGGTACATGTGTTAATATGAGTAGAGCTGTACCAGTGGTTTCATATCATTATGT
TACTCAAGGTGGTGATGAAAATACTTTAATTAAAACCATCGTCAATGATGGTCCAGTAAG
TATTTGTGTTGATGCTTCAACATGGCAATCCTATTCTGGTGGTATTATTACAACTGGTTG
TGGTAAAAACATTGATCATTGTGTTCAAGTAGTTGGTTTAGAAGTTGATAAAACTGATCC
ATCAAATCCAGTTCAATATTATATCATTAGAAATTCTTGGGGTACTGATTGGGGTATTGA
TGGATACATTTACGTAGCTACTGGTTCTGATTTATGTGGTATTACTTATGAATCAACAAT
GGTTGATGTATAAATACATTAATTTTCCTCTTCTCTCTCTCTATATTTGTATGATTTCTG
TTGTAAAAAAAAAAATAAAAAAAAAAAATAAAATTAATTGTTAAAAAAAAAAAAAAAAAA
sequence update 1998. 2. 4
Translated Amino Acid sequence
---CDPYDGQCGGGDPYTVYEYFSQVGGVSTNAQYPYTATDGTCVNMSRAVPVVSYHYVT
QGGDENTLIKTIVNDGPVSICVDASTWQSYSGGIITTGCGKNIDHCVQVVGLEVDKTDPS
NPVQYYIIRNSWGTDWGIDGYIYVATGSDLCGITYESTMVDV*ih*fssslslylydfcc
kkknkkkk*n*llkkkkk


Translated Amino Acid sequence (All Frames)
Frame A:
---ivihmmanvvvvihiqfmnilvklvvlvlmlnihillqmvhvli*velyqwfhiiml
lkvvmkil*lkpssmmvq*vfvlmlqhgnpilvvllqlvvvktliivfk*lv*kliklih
qiqfniisleilgvligvlmdtft*llvliyvvllmnqqwlmykyinfpllslyicmisv
vkkkikkknkinc*kkkkk


Frame B:
---l*si*wpmwww*siysl*if*sswwc*y*csisiycyrwymc*ye*sctsgfislcy
srw**kyfn*nhrq*wsskylc*cfnmailfwwyyynwlw*kh*slcssswfrs**n*si
ksssilyh*kflgy*lgy*wihlrsywf*fmwyyl*inng*cintliflfslsifv*fll
*kkk*kkkiklivkkkkkk


Frame C:
---CDPYDGQCGGGDPYTVYEYFSQVGGVSTNAQYPYTATDGTCVNMSRAVPVVSYHYVT
QGGDENTLIKTIVNDGPVSICVDASTWQSYSGGIITTGCGKNIDHCVQVVGLEVDKTDPS
NPVQYYIIRNSWGTDWGIDGYIYVATGSDLCGITYESTMVDV*ih*fssslslylydfcc
kkknkkkk*n*llkkkkk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSK693 (SSK693Q) /CSM/SS/SSK6-D/SSK693Q.Seq.d/ 1059 0.0
SSI455 (SSI455Q) /CSM/SS/SSI4-C/SSI455Q.Seq.d/ 1059 0.0
SSH895 (SSH895Q) /CSM/SS/SSH8-D/SSH895Q.Seq.d/ 1059 0.0
SSE774 (SSE774Q) /CSM/SS/SSE7-D/SSE774Q.Seq.d/ 1059 0.0
SSD408 (SSD408Q) /CSM/SS/SSD4-A/SSD408Q.Seq.d/ 1059 0.0
SSJ874 (SSJ874Q) /CSM/SS/SSJ8-D/SSJ874Q.Seq.d/ 1051 0.0
SSE224 (SSE224Q) /CSM/SS/SSE2-A/SSE224Q.Seq.d/ 1051 0.0
SSH864 (SSH864Q) /CSM/SS/SSH8-C/SSH864Q.Seq.d/ 1045 0.0
SSL745 (SSL745Q) /CSM/SS/SSL7-B/SSL745Q.Seq.d/ 1043 0.0
SSE146 (SSE146Q) /CSM/SS/SSE1-B/SSE146Q.Seq.d/ 1031 0.0

own update 2000. 8.29
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116956|AC116956.2 Dictyostelium discoideum chromosome 2 map 1418423-1684967 strain AX4, complete sequence. 789 0.0 2
AV831455|AV831455.1 Arabidopsis thaliana cDNA clone:RAFL09-89-F10, 5'-end. 46 0.49 1
AY072161|AY072161.1 Arabidopsis thaliana putative DNA-binding protein (At1g68810) mRNA, complete cds. 46 0.49 1
AZ537802|AZ537802.1 ENTEG63TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 46 0.49 1
AY156072|AY156072.1 Entamoeba histolytica cysteine protease 14 (CP14) gene, complete cds. 46 0.49 1
AL731782|AL731782.14 Mouse DNA sequence from clone RP23-180G3 on chromosome X. 36 0.64 6
AC011914|AC011914.9 Arabidopsis thaliana chromosome 1 BAC F14K14 genomic sequence, complete sequence. 46 0.71 2
AC011665|AC011665.8 Arabidopsis thaliana chromosome 1 BAC T6L1 genomic sequence, complete sequence. 46 1.1 3
AC090331|AC090331.1 Homo sapiens chromosome 18 clone RP11-813H9 map 18, LOW-PASS SEQUENCE SAMPLING. 44 1.9 1
AC108704|AC108704.3 Homo sapiens 12 BAC RP11-21K12 (Roswell Park Cancer Institute Human BAC Library) complete sequence. 44 1.9 1
dna update 2003. 7.29
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC116956_19(AC116956|pid:none) Dictyostelium discoideum chromoso... 346 3e-94
BT052642_1(BT052642|pid:none) Medicago truncatula clone MTYFD_FE... 118 1e-25
(O65039) RecName: Full=Vignain; EC=3.4.22.-; AltName: F... 112 8e-24
(P04988) RecName: Full=Cysteine proteinase 1; EC=3.4.22... 111 2e-23
BT042417_1(BT042417|pid:none) Zea mays full-length cDNA clone ZM... 110 4e-23
EF538805_1(EF538805|pid:none) Trypanoplasma borreli cathepsin L ... 109 6e-23
FB844650_1(FB844650|pid:none) Sequence 63923 from Patent WO20080... 108 8e-23
(P25251) RecName: Full=Cysteine proteinase COT44; EC=3.... 107 2e-22
U49445_1(U49445|pid:none) Vigna radiata cysteinyl endopeptidase ... 107 3e-22
FB844632_1(FB844632|pid:none) Sequence 63905 from Patent WO20080... 106 4e-22
protein update 2009. 6.13
PSORT

psg: 0.75 gvh: 0.43 alm: 0.45 top: 0.53 tms: 0.00 mit: 0.17 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

52.0 %: cytoplasmic
20.0 %: nuclear
8.0 %: cytoskeletal
8.0 %: mitochondrial
4.0 %: vacuolar
4.0 %: vesicles of secretory system
4.0 %: endoplasmic reticulum

>> prediction for SSH895 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSH895Z
3' end seq.
>SSH895Z.Seq
----------GATTGTGATCCATATGATGGCCAATGTGGTGGTGGTGATCCATATACAGT
TTATGAATATTTTAGTCAAGTTGGTGGTGTTAGTACTAATGCTCAATATCCATATACTGC
TACAGATGGTACATGTGTTAATATGAGTAGAGCTGTACCAGTGGTTTCATATCATTATGT
TACTCAAGGTGGTGATGAAAATACTTTAATTAAAACCATCGTCAATGATGGTCCAGTAAG
TATTTGTGTTGATGCTTCAACATGGCAATCCTATTCTGGTGGTATTATTACAACTGGTTG
TGGTAAAAACATTGATCATTGTGTTCAAGTAGTTGGTTTAGAAGTTGATAAAACTGATCC
ATCAAATCCAGTTCAATATTATATCATTAGAAATTCTTGGGGTACTGATTGGGGTATTGA
TGGATACATTTACGTAGCTACTGGTTCTGATTTATGTGGTATTACTTATGAATCAACAAT
GGTTGATGTATAAATACATTAATTTTCCTCTTCTCTCTCTCTATATTTGTATGATTTCTG
TTGTAAAAAAAAAAATAAAAAAAAAAAATAAAATTAATTGTTAAAAAAAAAAAAAAAAAA
Length of 3' end seq. 590
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -