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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSH893
Library SS
(Link to library)
Clone ID SSH893
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16327-1
Original site URL
Representative seq. ID SSH893F
(Link to Original site)
Representative DNA sequence 
>SSH893 (SSH893Q) /CSM/SS/SSH8-D/SSH893Q.Seq.d/
AAAAAAAAAAAAAAAAAACAACCAAAATATTATATTATTTTTTGTAAATATAAATTAAAA
AAATGAAATTCCAACATACATTTATTGCATTATTATCACTATTAACATATGCAAATGCAT
ATGATTATTTCACAACAACATTGGCCAATCAAAATCCAGTTTGTGCTTCAGTAGATGTCA
TACAAAATGTTTGTACTGAGGTTTGTGGTAGATTTGTCCGTTACATTCCTGATGCTACCA
ATACAAATCAATTCACTTTTGCCGAATATACTACAAACCAATGTACTGTTCAAGTAACAC
CAGCTGTAACAAATACATTTACTTGCGCTGATCAAACTTCTTCACATGCACTCGGTTCTG
ATTGGAGTGGAGTTTGTAAAATCACXXXXXXXXXX
sequence update 1999. 1.17
Translated Amino Acid sequence 
kkkkkttkilyyfl*i*IKKMKFQHTFIALLSLLTYANAYDYFTTTLANQNPVCASVDVI
QNVCTEVCGRFVRYIPDATNTNQFTFAEYTTNQCTVQVTPAVTNTFTCADQTSSHALGSD
WSGVCKI---
Translated Amino Acid sequence (All Frames) 
Frame A:
kkkkkkqpkyyiifckyklkk*nsnihllhyyhy*hmqmhmiisqqhwpikiqfvlq*ms
ykmfvlrfvvdlsvtflmlpiqinsllpnilqtnvlfk*hql*qihllalikllhmhsvl
igvefvks---


Frame B:
kkkkknnqniilffvnin*kneiptyiyciiitinickci*lfhnnigqsksslcfsrch
tkcly*glw*icplhs*cyqyksihfcriyykpmycssntscnkyiylr*snfftctrf*
lewsl*n---


Frame C:
kkkkkttkilyyfl*i*IKKMKFQHTFIALLSLLTYANAYDYFTTTLANQNPVCASVDVI
QNVCTEVCGRFVRYIPDATNTNQFTFAEYTTNQCTVQVTPAVTNTFTCADQTSSHALGSD
WSGVCKI---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSI759 (SSI759Q) /CSM/SS/SSI7-C/SSI759Q.Seq.d/                        686   0.0
SSI680 (SSI680Q) /CSM/SS/SSI6-D/SSI680Q.Seq.d/                        686   0.0
SSI169 (SSI169Q) /CSM/SS/SSI1-C/SSI169Q.Seq.d/                        686   0.0
SSH893 (SSH893Q) /CSM/SS/SSH8-D/SSH893Q.Seq.d/                        686   0.0
SSC612 (SSC612Q) /CSM/SS/SSC6-A/SSC612Q.Seq.d/                        686   0.0
SSC554 (SSC554Q) /CSM/SS/SSC5-C/SSC554Q.Seq.d/                        686   0.0
SLG216 (SLG216Q) /CSM/SL/SLG2-A/SLG216Q.Seq.d/                        686   0.0
SHL528 (SHL528Q) /CSM/SH/SHL5-B/SHL528Q.Seq.d/                        686   0.0
SHJ757 (SHJ757Q) /CSM/SH/SHJ7-C/SHJ757Q.Seq.d/                        686   0.0
SHG754 (SHG754Q) /CSM/SH/SHG7-C/SHG754Q.Seq.d/                        686   0.0
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

M20909|M20909.1 Dictyostelium discoideum cell surface glycoprotein PsA precursor (D19) gene, complete cds.   638  0.0  2
X15980|X15980.1 Dictyostelium discoideum D19 gene 5'-flanking region.   638  0.0  2
BD075065|BD075065.1 Expression of gonadotropin in Dictyostelium.   111  6e-21  1
A98322|A98322.1 Sequence 1 from Patent WO9913081.                111  6e-21  1
A21625|A21625.1 expression vector pMUW1630.                      105  4e-19  1
AL035475|AL035475.7 Plasmodium falciparum MAL4P2.                 48  0.081  1
BE822914|BE822914.1 GM700019A20A10 Gm-r1070 Glycine max cDNA clone Gm-r1070-7316 3', mRNA sequence.    48  0.081  1
AC113893|AC113893.6 Rattus norvegicus clone CH230-321O13, WORKING DRAFT SEQUENCE, 1 ordered piece.    46  0.32  1
AC106123|AC106123.5 Rattus norvegicus clone CH230-116N2, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    46  0.32  1
AC017442|AC017442.1 Drosophila melanogaster, WORKING DRAFT SEQUENCE, in ordered pieces.    46  0.32  1
dna update 2003. 8. 8
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54LC3) RecName: Full=Ponticulin-like protein C2; Flags: Precur...    53   3e-06
A98322_1(A98322|pid:none) Sequence 1 from Patent WO9913081.            41   0.014
(P36170) RecName: Full=Putative uncharacterized protein YKR102W;...    34   1.8
CP000441_1555(CP000441|pid:none) Burkholderia ambifaria AMMD chr...    32   5.2
CP001322_2279(CP001322|pid:none) Desulfatibacillum alkenivorans ...    32   5.2
protein update 2009. 1.31
PSORT 

 psg: 0.96  gvh: 0.78  alm: 0.43  top: 0.17  tms: 0.00  mit: 0.32  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.30  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: extracellular, including cell wall
	 12.0 %: vacuolar
	 12.0 %: endoplasmic reticulum
	  8.0 %: cytoplasmic
	  8.0 %: nuclear
	  4.0 %: mitochondrial

>> prediction for SSH893 is exc
5' end seq. ID SSH893F
5' end seq. 
>SSH893F.Seq
AAAAAAAAAAAAAAAAAACAACCAAAATATTATATTATTTTTTGTAAATATAAATTAAAA
AAATGAAATTCCAACATACATTTATTGCATTATTATCACTATTAACATATGCAAATGCAT
ATGATTATTTCACAACAACATTGGCCAATCAAAATCCAGTTTGTGCTTCAGTAGATGTCA
TACAAAATGTTTGTACTGAGGTTTGTGGTAGATTTGTCCGTTACATTCCTGATGCTACCA
ATACAAATCAATTCACTTTTGCCGAATATACTACAAACCAATGTACTGTTCAAGTAACAC
CAGCTGTAACAAATACATTTACTTGCGCTGATCAAACTTCTTCACATGCACTCGGTTCTG
ATTGGAGTGGAGTTTGTAAAATCAC----------
Length of 5' end seq. 385
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -