>SSH878 (SSH878Q) /CSM/SS/SSH8-D/SSH878Q.Seq.d/
ATAAAGATGGTTAGCGTTAAAAAAGTCAAGAAATCACAAGAAAACATTGGTTCTAAATTA
GCCCTCGTCATGAAGAGTGGTAAATCCCAATTAGGTTACAAATCAACCCTTAAAACCTTA
AGAGCTGGTAAATCAAAATTAATTTTACTCGCTAGCAATTTACCATCAATCCGTAGATCT
GAAATCGAATACTACGCTATGTTAAGCAAAACCACCGTCCATTTATACTCAGGTAACAAT
GTTGACTTAGGTACTGCTTTAGGTCGTCACTACAGAGTCTCTGTTATGTCAATTACCGAT
GCTGGTGACTCAGATATCTTAACTGCTTTAAACGCTAAAGCTTAAATGTAAATTGAGTTA
TTAAATAAATACCTA

IKMVSVKKVKKSQENIGSKLALVMKSGKSQLGYKSTLKTLRAGKSKLILLASNLPSIRRS
EIEYYAMLSKTTVHLYSGNNVDLGTALGRHYRVSVMSITDAGDSDILTALNAKA*m*iel
lnkyl

Frame A:
IKMVSVKKVKKSQENIGSKLALVMKSGKSQLGYKSTLKTLRAGKSKLILLASNLPSIRRS
EIEYYAMLSKTTVHLYSGNNVDLGTALGRHYRVSVMSITDAGDSDILTALNAKA*m*iel
lnkyl


Frame B:
*rwlalkksrnhkktlvln*pss*rvvnpn*vtnqplkp*elvnqn*fyslaiyhqsvdl
ksnttlc*akppsiytqvtmlt*vll*vvttesllcqlpmlvtqis*ll*tlklkcklsy
*int


Frame C:
kdg*r*ksqeitrkhwf*isprheew*ipirlqinp*nlksw*ikinftr*qftinp*i*
nrilryvkqnhrpfilr*qc*lrycfrsslqslcyvnyrcw*lrylncfkr*slnvn*vi
k*ip

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSF780 (VSF780Q) /CSM/VS/VSF7-D/VSF780Q.Seq.d/                        743   0.0
VHA463 (VHA463Q) /CSM/VH/VHA4-C/VHA463Q.Seq.d/                        743   0.0
VHA213 (VHA213Q) /CSM/VH/VHA2-A/VHA213Q.Seq.d/                        743   0.0
SSH878 (SSH878Q) /CSM/SS/SSH8-D/SSH878Q.Seq.d/                        743   0.0
FC-AR22 (FC-AR22Q) /CSM/FC/FC-AR/FC-AR22Q.Seq.d/                      743   0.0
VFM680 (VFM680Q) /CSM/VF/VFM6-D/VFM680Q.Seq.d/                        722   0.0
VSE215 (VSE215Q) /CSM/VS/VSE2-A/VSE215Q.Seq.d/                        686   0.0
FC-IC0858 (FC-IC0858Q) /CSM/FC-IC/FC-IC0858Q.Seq.d/                   440   e-123
VFN308 (VFN308Q) /CSM/VF/VFN3-A/VFN308Q.Seq.d/                         36   0.36
VFM875 (VFM875Q) /CSM/VF/VFM8-D/VFM875Q.Seq.d/                         36   0.36

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AA841720|AA841720.1 MB3D6V6D07T3 Brugia malayi day 6 post-infection third stage larvae SAW96MLW-BmL3d6 Brugia malayi cDNA clone 3D6V6D07 5', mRNA sequence.    48  4e-04  2
AJ223316|AJ223316.1 Lupinus luteus mRNA for ribosomal protein L30.    52  0.005  1
CA755907|CA755907.1 BR030031000_PLATE_A09_65_068.ab1 OA Oryza sativa (japonica cultivar-group) cDNA clone BR030031000_PLATE_A09_65_068.ab1 similar to 60S ribosomal protein L30, mRNA sequence.    50  0.019  1
BQ641167|BQ641167.1 EST290 almond cDNA library Prunus dulcis cDNA 5' similar to ribosomal protein L30, mRNA sequence.    48  0.076  1
AZ590137|AZ590137.1 1M0399K06R Mouse 10kb plasmid UUGC1M library Mus musculus genomic clone UUGC1M0399K06 R, DNA sequence.    48  0.076  1
BU572652|BU572652.1 PA__Ea0001H21f Almond developing seed Prunus dulcis cDNA clone PA__Ea0001H21f, mRNA sequence.    48  0.076  1
BU573578|BU573578.1 PA__Ea0004H03f Almond developing seed Prunus dulcis cDNA clone PA__Ea0004H03f, mRNA sequence.    48  0.076  1
BU836156|BU836156.1 T083C10 Populus apical shoot cDNA library Populus tremula x Populus tremuloides cDNA 5 prime, mRNA sequence.    34  0.50  2
CB303517|CB303517.1 wsa0001_IIIaR_H06 Tulare pellicle library Juglans regia cDNA clone wsa0001_IIIaR_H06 3', mRNA sequence.    40  0.53  2
BE641829|BE641829.1 Cri2_4_F23_SP6 Ceratopteris Spore Library Ceratopteris richardii cDNA clone Cri2_4_F23 5', mRNA sequence.    38  0.68  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q55BS9) RecName: Full=60S ribosomal protein L30;                     196   3e-49
EU302552_1(EU302552|pid:none) Lineus viridis ribosomal protein r...   141   6e-33
AY769300_1(AY769300|pid:none) Bombyx mori ribosomal protein L30 ...   137   2e-31
(P58375) RecName: Full=60S ribosomal protein L30;  &AF400193_1(A...   137   2e-31
(Q9UTP0) RecName: Full=60S ribosomal protein L30-2;  &AL110509_2...   136   2e-31
DQ411573_1(DQ411573|pid:none) Pteris vittata clone PVU18 ribosom...   136   3e-31
AF526198_1(AF526198|pid:none) Argopecten irradians isolate iolsa...   135   3e-31
DQ440259_1(DQ440259|pid:none) Aedes aegypti clone AET-3168 60S r...   135   3e-31
(P52808) RecName: Full=60S ribosomal protein L30-1; AltName: Ful...   135   6e-31
EF634720_1(EF634720|pid:none) Koerneria sp. RS1982 large subunit...   134   8e-31

 psg: 0.54  gvh: 0.56  alm: 0.49  top: 0.53  tms: 0.00  mit: 0.39  mip: 0.10
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.30  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 1.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 80.0 %: cytoplasmic
	 20.0 %: mitochondrial

>> prediction for SSH878 is cyt

>SSH878E.Seq
ATAAAGATGGTTAGCGTTAAAAAAGTCAAGAAATCACAAGAAAACATTGGTTCTAAATTA
GCCCTCGTCATGAAGAGTGGTAAATCCCAATTAGGTTACAAATCAACCCTTAAAACCTTA
AGAGCTGGTAAATCAAAATTAATTTTACTCGCTAGCAATTTACCATCAATCCGTAGATCT
GAAATCGAATACTACGCTATGTTAAGCAAAACCACCGTCCATTTATACTCAGGTAACAAT
GTTGACTTAGGTACTGCTTTAGGTCGTCACTACAGAGTCTCTGTTATGTCAATTACCGAT
GCTGGTGACTCAGATATCTTAACTGCTTTAAACGCTAAAGCTTAAATGTAAATTGAGTTA
TTAAATAAATACCTA