NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSH876
Library SS
(Link to library)
Clone ID SSH876
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14096-1
Original site URL
Representative seq. ID SSH876Z
(Link to Original site)
Representative DNA sequence 
>SSH876 (SSH876Q) /CSM/SS/SSH8-D/SSH876Q.Seq.d/
XXXXXXXXXXCAAACCGATGTTGATGTATGGATTGTCAAAGGTAAACAACAATGCAATGT
AACCAGATCTTGTATTCTAATTCAAAAAGATACATGTACCCTTATGTCTGCCAATTTCGG
TAACAAAGATAAATCAAATCTAGGTTTCTCACTTTTAAATTATTATAGATATGAAAATAA
ACCACATTATGATAAATTCCAATTACCATCACAATGTTGGGATGTTAAACCAAAAGATGA
AAATGAAAATAAAGAAGAACAAGGTTTATTTGCAAATGAAGAAGAACTAGAAAATAAAGA
ATATTTTGGTGATAACCAACAAGCTCCATCAATGAGAATTACTAAAAATAATCCACATAT
AAATAATAATAATAATAATAAAAAATATCATCATAGAGAACATGAAACACCAAATCCAGA
CCTTATCAAAACAACCACAAAAACATCAACAAAAACAACATCATTTTCAAGAGCCACTAA
TGATTCACCAAAATCAATTGATTTCCATCACTTATTTTAATTTTTAAATTCTAAATAAAG
TTTAAATTTAAATATTTTCTTTTGTTTTTTTTTTTATAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAA
sequence update 1998. 2. 4
Translated Amino Acid sequence 
---TDVDVWIVKGKQQCNVTRSCILIQKDTCTLMSANFGNKDKSNLGFSLLNYYRYENKP
HYDKFQLPSQCWDVKPKDENENKEEQGLFANEEELENKEYFGDNQQAPSMRITKNNPHIN
NNNNNKKYHHREHETPNPDLIKTTTKTSTKTTSFSRATNDSPKSIDFHHLF*flnsk*sl
nlniffcfffykkkkkkkkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
---kpmlmyglskvnnnam*pdlvf*fkkihvplclpisvtkinqi*vshf*iiidmkin
himinsnyhhnvgmlnqkmkmkikknkvylqmkkn*kiknilvitnklhq*ellkiihi*
iiiiiikniiienmkhqiqtlskqpqkhqqkqhhfqeplmihqnqlisityfnf*ilnkv
*i*ifsfvfffikkkkkkkkkkk


Frame B:
---nrc*cmdcqr*ttmqcnqilysnskrymypyvcqfr*qr*iksrfltfkll*i*k*t
tl**ipititmlgc*tkr*k*k*rrtrfick*rrtrk*rifw**ptssineny*k*styk
******kiss*rt*ntksrpyqnnhkninknniifksh**ftkin*fpslilifkf*ikf
kfkyfllfffl*kkkkkkkkkkk


Frame C:
---TDVDVWIVKGKQQCNVTRSCILIQKDTCTLMSANFGNKDKSNLGFSLLNYYRYENKP
HYDKFQLPSQCWDVKPKDENENKEEQGLFANEEELENKEYFGDNQQAPSMRITKNNPHIN
NNNNNKKYHHREHETPNPDLIKTTTKTSTKTTSFSRATNDSPKSIDFHHLF*flnsk*sl
nlniffcfffykkkkkkkkkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM335 (SSM335Q) /CSM/SS/SSM3-B/SSM335Q.Seq.d/                        658   0.0
SSK867 (SSK867Q) /CSM/SS/SSK8-C/SSK867Q.Seq.d/                        658   0.0
SSK701 (SSK701Q) /CSM/SS/SSK7-A/SSK701Q.Seq.d/                        658   0.0
SSK159 (SSK159Q) /CSM/SS/SSK1-C/SSK159Q.Seq.d/                        658   0.0
SSH876 (SSH876Q) /CSM/SS/SSH8-D/SSH876Q.Seq.d/                        658   0.0
SSF594 (SSF594Q) /CSM/SS/SSF5-D/SSF594Q.Seq.d/                        658   0.0
SSI343 (SSI343Q) /CSM/SS/SSI3-B/SSI343Q.Seq.d/                        650   0.0
SSI591 (SSI591Q) /CSM/SS/SSI5-D/SSI591Q.Seq.d/                        642   0.0
SSD307 (SSD307Q) /CSM/SS/SSD3-A/SSD307Q.Seq.d/                        634   0.0
SFG563 (SFG563Q) /CSM/SF/SFG5-C/SFG563Q.Seq.d/                        615   e-175
own update 2002.12.13
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC117176|AC117176.2 Dictyostelium discoideum chromosome 2 map 5018074-5200947 strain AX4, complete sequence.    34  0.005  9
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    36  0.007  10
AF063866|AF063866.1 Melanoplus sanguinipes entomopoxvirus, complete genome.    34  0.007  9
AC145187|AC145187.2 Bos taurus clone RP42-30M12, WORKING DRAFT SEQUENCE, 3 ordered pieces.    52  0.008  1
CC578756|CC578756.1 CH240_457F8.T7 CHORI-240 Bos taurus genomic clone CH240_457F8, genomic survey sequence.    52  0.008  1
AC115599|AC115599.2 Dictyostelium discoideum chromosome 2 map 4229098-4354721 strain AX4, complete sequence.    42  0.010  7
AC126586|AC126586.4 Rattus norvegicus clone CH230-237A8, WORKING DRAFT SEQUENCE, 2 unordered pieces.    46  0.017  5
AC014002|AC014002.1 Drosophila melanogaster, WORKING DRAFT SEQUENCE, in ordered pieces.    42  0.023  3
AC145255|AC145255.2 Bos taurus clone RP42-435F20, WORKING DRAFT SEQUENCE, 4 ordered pieces.    52  0.028  3
AC006224|AC006224.4 Arabidopsis thaliana chromosome 2 clone MFL8 map CIC10F02, complete sequence.    40  0.028  2
dna update 2003. 7.28
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116550_6(AC116550|pid:none) Dictyostelium discoideum chromosom...    44   0.004
AC116550_3(AC116550|pid:none) Dictyostelium discoideum chromosom...    43   0.008
CP000592_215(CP000592|pid:none) Ostreococcus lucimarinus CCE9901...    33   8.2
protein update 2009. 1.31
PSORT 

 psg: 0.56  gvh: 0.31  alm: 0.50  top: 0.53  tms: 0.00  mit: 0.16  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 32.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for SSH876 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSH876Z
3' end seq. 
>SSH876Z.Seq
----------CAAACCGATGTTGATGTATGGATTGTCAAAGGTAAACAACAATGCAATGT
AACCAGATCTTGTATTCTAATTCAAAAAGATACATGTACCCTTATGTCTGCCAATTTCGG
TAACAAAGATAAATCAAATCTAGGTTTCTCACTTTTAAATTATTATAGATATGAAAATAA
ACCACATTATGATAAATTCCAATTACCATCACAATGTTGGGATGTTAAACCAAAAGATGA
AAATGAAAATAAAGAAGAACAAGGTTTATTTGCAAATGAAGAAGAACTAGAAAATAAAGA
ATATTTTGGTGATAACCAACAAGCTCCATCAATGAGAATTACTAAAAATAATCCACATAT
AAATAATAATAATAATAATAAAAAATATCATCATAGAGAACATGAAACACCAAATCCAGA
CCTTATCAAAACAACCACAAAAACATCAACAAAAACAACATCATTTTCAAGAGCCACTAA
TGATTCACCAAAATCAATTGATTTCCATCACTTATTTTAATTTTTAAATTCTAAATAAAG
TTTAAATTTAAATATTTTCTTTTGTTTTTTTTTTTATAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAA
Length of 3' end seq. 603
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -