>SSH872 (SSH872Q) /CSM/SS/SSH8-C/SSH872Q.Seq.d/
XXXXXXXXXXCTTCAACAAAAACAAAATTCTTTGTCGCAGTAATGGGCGCTGGTTCAGTT
GGTAAATCAGCACTCACTGTTCAATTCACTCAAGGAGTTTTCATTGATAAATATGATCCA
ACAGTAGAAGATACATATACAAAAACATTTGAATTAGATGGTGAACAAGTATGTATTGAA
GTATTAGATACAGCAGGTTCAGAAGTATTAGTAGCAATGAGAGAATTATATATGAAAAAT
GCTGAAGGTTTTATATTAGTGTACAGTATTCTTGTTAAATCAACATTTTTAGAAATTAAA
GATATCGTCGAACAATTATTTAGAGTTAAAGAAGAAGAAGAAGTACCAATTGTTTTAGTT
GGTAACAAAATAGATTTAGACGCTCACAGAGAAGTTTCAACCAACGAAGGTAAACAGTTG
GCCAACTCTTATCCAAATTGTGATTTCTGGGAAGCTTCTTCAAAGGATAGAATCAATGTT
GATAATGTTTTCTTTAGTATCGTTAAAAGAATTAAAGAGAAATATAAGAAAGAAGGTGCA
CCAGTTAAAGAAAAAAAAGAAAAATGTATCATTATGTAATTAATATTTTAATAGTTTTTA
ATAATAATAA

---STKTKFFVAVMGAGSVGKSALTVQFTQGVFIDKYDPTVEDTYTKTFELDGEQVCIEV
LDTAGSEVLVAMRELYMKNAEGFILVYSILVKSTFLEIKDIVEQLFRVKEEEEVPIVLVG
NKIDLDAHREVSTNEGKQLANSYPNCDFWEASSKDRINVDNVFFSIVKRIKEKYKKEGAP
VKEKKEKCIIM*lif**fliii

Frame A:
---fnknkilcrsngrwfsw*isthcsihsrsfh**i*snsrryiykni*irw*tsmy*s
irysrfrsissneriiyekc*rfyisvqysc*inifrn*ryrrtii*s*rrrrstncfsw
*qnrfrrsqrsfnqrr*tvgqllskl*flgsffkg*nqc**cfl*yr*kn*rei*errct
s*rkkrkmyhyvinilivfnnn


Frame B:
---STKTKFFVAVMGAGSVGKSALTVQFTQGVFIDKYDPTVEDTYTKTFELDGEQVCIEV
LDTAGSEVLVAMRELYMKNAEGFILVYSILVKSTFLEIKDIVEQLFRVKEEEEVPIVLVG
NKIDLDAHREVSTNEGKQLANSYPNCDFWEASSKDRINVDNVFFSIVKRIKEKYKKEGAP
VKEKKEKCIIM*lif**fliii


Frame C:
---qqkqnslsq*walvqlvnqhslfnslkefslinmiqq*kihiqkhln*mvnkyvlky
*iqqvqky**q*enyi*kmlkvly*ctvfllnqhf*klkissnnylelkkkkkyqlf*lv
tk*i*tltekfqptkvnswptliqivisgkllqriesmlimfslvslkelkrnirkkvhq
lkkkkknvslcn*yfnsf****

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSH872 (SSH872Q) /CSM/SS/SSH8-C/SSH872Q.Seq.d/                       1063   0.0
CHH803 (CHH803Q) /CSM/CH/CHH8-A/CHH803Q.Seq.d/                        406   e-112
SSM496 (SSM496Q) /CSM/SS/SSM4-D/SSM496Q.Seq.d/                         38   0.15
SSM157 (SSM157Q) /CSM/SS/SSM1-C/SSM157Q.Seq.d/                         38   0.15
SSL635 (SSL635Q) /CSM/SS/SSL6-B/SSL635Q.Seq.d/                         38   0.15
SSL566 (SSL566Q) /CSM/SS/SSL5-C/SSL566Q.Seq.d/                         38   0.15
SSI165 (SSI165Q) /CSM/SS/SSI1-C/SSI165Q.Seq.d/                         38   0.15
SSH840 (SSH840Q) /CSM/SS/SSH8-B/SSH840Q.Seq.d/                         38   0.15
SSF633 (SSF633Q) /CSM/SS/SSF6-B/SSF633Q.Seq.d/                         38   0.15
SSE837 (SSE837Q) /CSM/SS/SSE8-B/SSE837Q.Seq.d/                         38   0.15

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence.   862  0.0  6
U01051|U01051.1 Entamoeba histolytica HM-1:IMSS rap homologue 1 (EhRAP1) gene, complete cds.    46  9e-07  3
U01052|U01052.1 Entamoeba histolytica HM-1:IMSS rap homologue 2 (EhRAP2) gene, complete cds.    36  0.002  3
AZ677576|AZ677576.1 ENTLH55TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    36  0.003  3
CD838299|CD838299.1 RFO2.110K22F010522 RFO2 Brassica napus cDNA clone RFO2110K22, mRNA sequence.    48  0.005  2
CD820734|CD820734.1 BN20.053K09F020326 BN20 Brassica napus cDNA clone BN20053K09, mRNA sequence.    48  0.007  2
AC092783|AC092783.2 Homo sapiens chromosome 1 clone RP5-827O9, complete sequence.    34  0.020  6
AC116741|AC116741.3 Mus musculus clone RP23-29L19, WORKING DRAFT SEQUENCE, 8 ordered pieces.    36  0.020  6
AL777963|AL777963.1 Xenopus tropicalis EST, clone TNeu077l08 5'.    46  0.021  2
BQ392336|BQ392336.1 NISC_mq23h06.y1 NICHD XGC Emb5 Silurana tropicalis cDNA clone IMAGE:5309434 5', mRNA sequence.    46  0.021  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC117075_6(AC117075|pid:none) Dictyostelium discoideum chromosom...   371   e-101
(P18613) RecName: Full=Ras-related protein Rap-1; Flags: Precurs...   202   8e-51
(Q94694) RecName: Full=Ras-related protein Rap-1; AltName: Full=...   202   8e-51
AF000653_1(AF000653|pid:none) Physarum polycephalum Pprap1 prote...   202   8e-51
BT050090_1(BT050090|pid:none) Salmo salar clone ssal-evd-558-184...   201   1e-50
AB170011_1(AB170011|pid:none) Bombyx mori ras3 mRNA for ras prot...   200   2e-50
BT075730_1(BT075730|pid:none) Osmerus mordax clone omor-eva-506-...   200   2e-50
BT046913_1(BT046913|pid:none) Salmo salar clone ssal-evd-523-272...   199   5e-50
BT076654_1(BT076654|pid:none) Caligus rogercresseyi clone crog-e...   198   9e-50
BT077285_1(BT077285|pid:none) Caligus rogercresseyi clone crog-e...   198   9e-50

 psg: 0.96  gvh: 0.49  alm: 0.35  top: 0.33  tms: 0.00  mit: 0.26  mip: 0.00
 nuc: 0.04  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 1.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 20.0 %: extracellular, including cell wall
	 20.0 %: plasma membrane
	 16.0 %: cytoplasmic
	 16.0 %: nuclear
	  8.0 %: Golgi
	  8.0 %: vesicles of secretory system
	  4.0 %: cytoskeletal
	  4.0 %: endoplasmic reticulum
	  4.0 %: vacuolar

>> prediction for SSH872 is exc

>SSH872Z.Seq
----------CTTCAACAAAAACAAAATTCTTTGTCGCAGTAATGGGCGCTGGTTCAGTT
GGTAAATCAGCACTCACTGTTCAATTCACTCAAGGAGTTTTCATTGATAAATATGATCCA
ACAGTAGAAGATACATATACAAAAACATTTGAATTAGATGGTGAACAAGTATGTATTGAA
GTATTAGATACAGCAGGTTCAGAAGTATTAGTAGCAATGAGAGAATTATATATGAAAAAT
GCTGAAGGTTTTATATTAGTGTACAGTATTCTTGTTAAATCAACATTTTTAGAAATTAAA
GATATCGTCGAACAATTATTTAGAGTTAAAGAAGAAGAAGAAGTACCAATTGTTTTAGTT
GGTAACAAAATAGATTTAGACGCTCACAGAGAAGTTTCAACCAACGAAGGTAAACAGTTG
GCCAACTCTTATCCAAATTGTGATTTCTGGGAAGCTTCTTCAAAGGATAGAATCAATGTT
GATAATGTTTTCTTTAGTATCGTTAAAAGAATTAAAGAGAAATATAAGAAAGAAGGTGCA
CCAGTTAAAGAAAAAAAAGAAAAATGTATCATTATGTAATTAATATTTTAATAGTTTTTA
ATAATAATAA