>SSH868 (SSH868Q) /CSM/SS/SSH8-C/SSH868Q.Seq.d/
XXXXXXXXXXATGGAATGATAAATTCATGTCATGTTTGGTTGGTTCAAATGTTAGATGTA
ACATTTGGGAGCATAATGAAATTGATACTCCAACTCCAGGAAAATTCCAAGAATTGGCTC
AAGGCAGTACAAACAATGATTTAACCTCAATAAATGGTCTTTCAAAGTTCCAAGTCTTAC
CAGGAGCTTTTCAATGGGCAGTTGATGTTAAAATTGTCAACAAAGTTAATTCAACTGCTG
GTTCATATGAAATGACCATTACTCCATACCAAGTTGATAAGGTTGCTTGCAAAGATGGTG
ATGACTTTGTTCAATTGCCAATTCCAAAACTTACTCCACCAGATTCTGAAATTGTTAGCC
ATTTAACAGTTCGTCAAACACATACACCATATGACTATGTTGTAAATGGAAGTGTTTACT
TTAAATACTCCCCAACAACTGGCCAAGTTACAGTTATTAAAAAAGATGAGACATTCCCAA
AGAATATGACTGTTACACAAGATGATAATACATCTTTCATCTTTAACTTAAACTCTGAAA
AATAAAACAATATGTTTTTTTTTCTCTTTAAGAAAACTTTAAATAATAAAATTATGAATT
TCAGAAATTAAAAAAAAAAAAAAAAAAGGGGCGGCCGCCA

---WNDKFMSCLVGSNVRCNIWEHNEIDTPTPGKFQELAQGSTNNDLTSINGLSKFQVLP
GAFQWAVDVKIVNKVNSTAGSYEMTITPYQVDKVACKDGDDFVQLPIPKLTPPDSEIVSH
LTVRQTHTPYDYVVNGSVYFKYSPTTGQVTVIKKDETFPKNMTVTQDDNTSFIFNLNSEK
*nnmffflfkktlnnkimnfrn*kkkkkrggr

Frame A:
---WNDKFMSCLVGSNVRCNIWEHNEIDTPTPGKFQELAQGSTNNDLTSINGLSKFQVLP
GAFQWAVDVKIVNKVNSTAGSYEMTITPYQVDKVACKDGDDFVQLPIPKLTPPDSEIVSH
LTVRQTHTPYDYVVNGSVYFKYSPTTGQVTVIKKDETFPKNMTVTQDDNTSFIFNLNSEK
*nnmffflfkktlnnkimnfrn*kkkkkrggr


Frame B:
---gminschvwlvqmldvtfgsimklilqlqensknwlkavqtmi*pq*mvfqssksyq
elfngqlmlklstkliqllvhmk*pllhtklirllakmvmtlfncqfqnllhqilkllai
*qfvkhihhmtml*mevftlntpqqlaklqllkkmrhsqri*llhkmiihlsslt*tlkn
kticfffslrkl*iikl*iseikkkkkkgaaa


Frame C:
---e**ihvmfgwfkc*m*hlga**n*ysnsrkiprigsrqykq*fnlnkwsfkvpsltr
sfsmgs*c*ncqqs*fncwfi*ndhysips**gclqrw**lcsiansktystrf*nc*pf
nsssntyti*lcckwkcll*ilpnnwpsysy*kr*dipkeydcytr**yifhl*lkl*ki
kqyvffsl*enfk**nyefqklkkkkkkgrpp

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSC180 (VSC180Q) /CSM/VS/VSC1-D/VSC180Q.Seq.d/                       1134   0.0
SSM611 (SSM611Q) /CSM/SS/SSM6-A/SSM611Q.Seq.d/                       1134   0.0
SSK866 (SSK866Q) /CSM/SS/SSK8-C/SSK866Q.Seq.d/                       1134   0.0
SSK494 (SSK494Q) /CSM/SS/SSK4-D/SSK494Q.Seq.d/                       1134   0.0
SSI186 (SSI186Q) /CSM/SS/SSI1-D/SSI186Q.Seq.d/                       1134   0.0
SSH868 (SSH868Q) /CSM/SS/SSH8-C/SSH868Q.Seq.d/                       1134   0.0
SSG844 (SSG844Q) /CSM/SS/SSG8-B/SSG844Q.Seq.d/                       1134   0.0
SSF771 (SSF771Q) /CSM/SS/SSF7-C/SSF771Q.Seq.d/                       1134   0.0
SSF496 (SSF496Q) /CSM/SS/SSF4-D/SSF496Q.Seq.d/                       1134   0.0
SSF108 (SSF108Q) /CSM/SS/SSF1-A/SSF108Q.Seq.d/                       1134   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

U49650|U49650.1 Dictyostelium discoideum calcium-dependent cell adhesion molecule-1 DdCAD-1 (cadA) mRNA, complete cds.  1061  0.0  1
U20997|U20997.1 Dictyostelium discoideum putative 25 kDa protein mRNA, partial cds.   930  0.0  3
AF340153|AF340153.1 Dictyostelium discoideum calcium-dependent cell adhesion molecule-1 (cadA) gene, complete cds.   628  0.0  4
AC116551|AC116551.2 Dictyostelium discoideum chromosome 2 map complement(581327-427576) strain AX4, complete sequence.    40  0.088  6
BZ357365|BZ357365.1 SALK_130634.51.25.x Arabidopsis thaliana TDNA insertion lines Arabidopsis thaliana genomic clone SALK_130634.51.25.x, DNA sequence.    46  0.53  1
AL096692|AL096692.1 Arabidopsis thaliana DNA *** SEQUENCING IN PROGRESS *** BAC clone  F17A13 (ESSAII project).    46  0.83  2
AC124492|AC124492.4 Mus musculus chromosome 12 clone RP23-454I23, complete sequence.    46  1.2  4
AL161574|AL161574.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 70.    46  1.5  2
AX356393|AX356393.1 Sequence 27 from Patent WO0181622.            36  1.6  2
AX345570|AX345570.1 Sequence 641 from Patent WO0200928.           36  1.6  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54657) RecName: Full=Calcium-dependent cell adhesion molecule ...   368   e-101
U20997_1(U20997|pid:none) Dictyostelium discoideum putative 25 k...   329   5e-89
AC116551_17(AC116551|pid:none) Dictyostelium discoideum chromoso...    95   2e-18
AJ575138_1(AJ575138|pid:none) Sordaria macrospora app gene for a...    58   3e-07
BX571864_113(BX571864|pid:none) Photorhabdus luminescens subsp. ...    54   3e-06
(A4YIG5) RecName: Full=Cysteinyl-tRNA synthetase;          EC=6....    34   3.0
CU207366_3569(CU207366|pid:none) Gramella forsetii KT0803 comple...    34   4.0
BA000026_784(BA000026|pid:none) Mycoplasma penetrans HF-2 DNA, c...    33   5.2
CP000685_4711(CP000685|pid:none) Flavobacterium johnsoniae UW101...    33   6.8
BA000026_783(BA000026|pid:none) Mycoplasma penetrans HF-2 DNA, c...    33   8.8

 psg: 0.93  gvh: 0.51  alm: 0.45  top: 0.37  tms: 0.00  mit: 0.26  mip: 0.04
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 32.0 %: cytoplasmic
	 12.0 %: extracellular, including cell wall
	  4.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for SSH868 is nuc

>SSH868Z.Seq
----------ATGGAATGATAAATTCATGTCATGTTTGGTTGGTTCAAATGTTAGATGTA
ACATTTGGGAGCATAATGAAATTGATACTCCAACTCCAGGAAAATTCCAAGAATTGGCTC
AAGGCAGTACAAACAATGATTTAACCTCAATAAATGGTCTTTCAAAGTTCCAAGTCTTAC
CAGGAGCTTTTCAATGGGCAGTTGATGTTAAAATTGTCAACAAAGTTAATTCAACTGCTG
GTTCATATGAAATGACCATTACTCCATACCAAGTTGATAAGGTTGCTTGCAAAGATGGTG
ATGACTTTGTTCAATTGCCAATTCCAAAACTTACTCCACCAGATTCTGAAATTGTTAGCC
ATTTAACAGTTCGTCAAACACATACACCATATGACTATGTTGTAAATGGAAGTGTTTACT
TTAAATACTCCCCAACAACTGGCCAAGTTACAGTTATTAAAAAAGATGAGACATTCCCAA
AGAATATGACTGTTACACAAGATGATAATACATCTTTCATCTTTAACTTAAACTCTGAAA
AATAAAACAATATGTTTTTTTTTCTCTTTAAGAAAACTTTAAATAATAAAATTATGAATT
TCAGAAATTAAAAAAAAAAAAAAAAAAGGGGCGGCCGCCA