>SSH861 (SSH861Q) /CSM/SS/SSH8-C/SSH861Q.Seq.d/
XXXXXXXXXXCATCATTAGAGTCCGAAGGTGCTGAACGTGAAAAGAGACTTCGTGAATTG
GAAGCCAAACTCGATGAAACCTTAAAGAACTTGGAATTAGAGAAATTGGCTCGTATGGAA
CTCGAAGCAAGATTAGCCAAGACCGAAAAGGATAGAGCTATCTTGGAATTGAAATTAGCT
GAAGCCATCGATGAAAAATCAAAACTCGAACAACAAATCGAAGCCACCAGAATCAGAGGT
GCTGCTGAAGCTCAAGGTCTTGGTCTCTTAAGAAAGAACCTCGACACTCACGTTCACGAT
TTACTCAAATGGCAAAAGTTAACAATGGAAAACTCTTCCTCATCCTCTATCGATGACCAA
ATCATCGTCGAAGTCTCTGGTCTTCCATTTGGTGAACAAGTTAAACATTTAGCCACAAAA
TTAGAAGCAGAAAATTTAGCAATTATGAAACTTTTAAATCAAAAAGAAGATGATTTAAAA
GCTCAAAAATTAAAATCATCAAAATCAAAAAAATAAATTAAAAAAATAATAATAACCAAA
AAAAAAAAAAAAAAAAAAAAAATCATATAATAATCTATTT

---SLESEGAEREKRLRELEAKLDETLKNLELEKLARMELEARLAKTEKDRAILELKLAE
AIDEKSKLEQQIEATRIRGAAEAQGLGLLRKNLDTHVHDLLKWQKLTMENSSSSSIDDQI
IVEVSGLPFGEQVKHLATKLEAENLAIMKLLNQKEDDLKAQKLKSSKSKK*ikkiiitkk
kkkkkkii**si

Frame A:
---iirvrrc*t*kets*igsqtr*nlkelgireigsygtrskisqdrkg*sylgieis*
shr*kiktrttnrshqnqrcc*ssrswslkkeprhsrsrftqmakvnngklflilyr*pn
hrrslwssiw*ts*tfshkirsrkfsnyetfkskrr*fksskikiikikkin*knnnnqk
kkkkkknhiiiy


Frame B:
---SLESEGAEREKRLRELEAKLDETLKNLELEKLARMELEARLAKTEKDRAILELKLAE
AIDEKSKLEQQIEATRIRGAAEAQGLGLLRKNLDTHVHDLLKWQKLTMENSSSSSIDDQI
IVEVSGLPFGEQVKHLATKLEAENLAIMKLLNQKEDDLKAQKLKSSKSKK*ikkiiitkk
kkkkkkii**si


Frame C:
---h*spkvlnvkrdfvnwkpnsmkp*rtwn*rnwlvwnskqd*prpkrielswn*n*lk
psmknqnsnnkskppesevllklkvlvs*ertstltftiysngks*qwktlphplsmtks
sskslvfhlvnklni*pqn*kqki*ql*nf*ikkkmi*klkn*nhqnqknklkk***pkk
kkkkkksynnlf

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSJ552 (VSJ552Q) /CSM/VS/VSJ5-C/VSJ552Q.Seq.d/                        876   0.0
VSJ276 (VSJ276Q) /CSM/VS/VSJ2-D/VSJ276Q.Seq.d/                        876   0.0
VSC127 (VSC127Q) /CSM/VS/VSC1-B/VSC127Q.Seq.d/                        876   0.0
VSB491 (VSB491Q) /CSM/VS/VSB4-D/VSB491Q.Seq.d/                        876   0.0
VFJ634 (VFJ634Q) /CSM/VF/VFJ6-B/VFJ634Q.Seq.d/                        876   0.0
VFD762 (VFD762Q) /CSM/VF/VFD7-C/VFD762Q.Seq.d/                        876   0.0
VFB810 (VFB810Q) /CSM/VF/VFB8-A/VFB810Q.Seq.d/                        876   0.0
SSH861 (SSH861Q) /CSM/SS/SSH8-C/SSH861Q.Seq.d/                        876   0.0
SSF572 (SSF572Q) /CSM/SS/SSF5-C/SSF572Q.Seq.d/                        876   0.0
SLE631 (SLE631Q) /CSM/SL/SLE6-B/SLE631Q.Seq.d/                        876   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

L49527|L49527.1 Dictyostelium discoideum cortexillin I mRNA, complete cds.   876  0.0  1
AF151101|AF151101.1 Polysphondylium pallidum cortexillin I gene, complete cds.    60  2e-10  4
AP003188|AP003188.2 Clostridium perfringens DNA, complete genome, section 4/10.    34  0.97  4
AC125270|AC125270.2 Mus musculus clone RP24-150L20, WORKING DRAFT SEQUENCE, 20 unordered pieces.    44  1.9  1
AC137938|AC137938.3 Mus musculus clone RP24-365C2, WORKING DRAFT SEQUENCE, 8 unordered pieces.    44  1.9  1
AL034395|AL034395.6 Human DNA sequence from clone 243L18 on chromosome 1p36.11-36.23.  Contains ESTs, STSs and GSSs.    38  2.7  2
AC095313|AC095313.5 Rattus norvegicus clone CH230-13M17, WORKING DRAFT SEQUENCE, 2 unordered pieces.    38  5.1  2
AC128261|AC128261.2 Rattus norvegicus clone CH230-43M22, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    38  5.2  2
AQ914477|AQ914477.1 nbeb0049C19f CUGI Rice BAC Library (EcoRI) Oryza sativa genomic clone nbeb0049C19f, genomic survey sequence.    38  6.1  2
AC111372|AC111372.4 Rattus norvegicus clone CH230-80G15, *** SEQUENCING IN PROGRESS ***, 8 unordered pieces.    42  7.4  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q9Y0T4) RecName: Full=Cortexillin-1; AltName: Full=Cortexillin ...   196   4e-49
(Q66H60) RecName: Full=Coiled-coil domain-containing protein 146...    39   0.10
A47297(A47297;A55441) myosin heavy chain form B, nonmuscle - Afr...    38   0.22
AF324061_1(AF324061|pid:none) Streptococcus pyogenes IgG Fc rece...    37   0.38
AF007557_1(AF007557|pid:none) Streptococcus pyogenes Mrp22 gene,...    37   0.38
X78483_2(X78483|pid:none) S.pyogenes (isolate 71-686) FcrA13 gen...    37   0.38
A33939(A33939) Fc gamma (IgG) receptor II precursor - Streptococ...    37   0.38
L08068_1(L08068|pid:none) Physarum polycephalum actin-binding pr...    37   0.38
CP000056_1698(CP000056|pid:none) Streptococcus pyogenes MGAS6180...    37   0.38
AB210007_1(AB210007|pid:none) Homo sapiens mRNA for NUMA1 varian...    37   0.50

 psg: 0.75  gvh: 0.32  alm: 0.50  top: 0.53  tms: 0.00  mit: 0.17  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 40.0 %: nuclear
	  4.0 %: vacuolar
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for SSH861 is cyt

>SSH861Z.Seq
----------CATCATTAGAGTCCGAAGGTGCTGAACGTGAAAAGAGACTTCGTGAATTG
GAAGCCAAACTCGATGAAACCTTAAAGAACTTGGAATTAGAGAAATTGGCTCGTATGGAA
CTCGAAGCAAGATTAGCCAAGACCGAAAAGGATAGAGCTATCTTGGAATTGAAATTAGCT
GAAGCCATCGATGAAAAATCAAAACTCGAACAACAAATCGAAGCCACCAGAATCAGAGGT
GCTGCTGAAGCTCAAGGTCTTGGTCTCTTAAGAAAGAACCTCGACACTCACGTTCACGAT
TTACTCAAATGGCAAAAGTTAACAATGGAAAACTCTTCCTCATCCTCTATCGATGACCAA
ATCATCGTCGAAGTCTCTGGTCTTCCATTTGGTGAACAAGTTAAACATTTAGCCACAAAA
TTAGAAGCAGAAAATTTAGCAATTATGAAACTTTTAAATCAAAAAGAAGATGATTTAAAA
GCTCAAAAATTAAAATCATCAAAATCAAAAAAATAAATTAAAAAAATAATAATAACCAAA
AAAAAAAAAAAAAAAAAAAAAATCATATAATAATCTATTT