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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSH847
Library SS
(Link to library)
Clone ID SSH847
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U01248-1
Original site URL
Representative seq. ID SSH847E
(Link to Original site)
Representative DNA sequence 
>SSH847 (SSH847Q) /CSM/SS/SSH8-B/SSH847Q.Seq.d/
AAAAAAAAAAAAAAACTCAAAAATTTTTTGAAAATTTTTCCCAAACCTTGTCGTTTTTTT
TTTCACATTAAAATTTTATTTCTTCACTCTTAGTTTTAGTCATACCAAAATATAAAAAAT
GGGTCGTCGTCCAGCTAGATGCTACAGATATTGCAAAAACAAACCATACATCAAATCTAG
ATATTGTCGTGTACCAGATGCTAAAATCAGAATTTTCGATTTAGGTCGTAAGAAAGCATC
AACTGATGAATTCCCATTATGTGTTCATCTCATCTCCCTCCGAAAAAGAACAACTTTCAT
CAGAAGCCATTGAAGCTGGTCGTATTTCATGTAACAAATACATCTCAAAGACTGGTGGTA
AAGATTCATTCCACATGAGAGTCAGAGTTCACCCATGGCACGTATTACGTATTAACAAGA
TGCTTTCATGCGCTGGTGCAGATAGACTTCAAACCGGTATGAGAGGTGCCTTCGGTAAAC
CAATGGGTACTGTTGCTCGTGTTAATATTGGTCAAATCATTTTCTCCATCAGAACCAGAG
ATAATATGTTAGCCAACGTTGTTGAAGCTTTACGTAGATCTTCATACAAATTCCCAGGTC
GTCAAAAGATCGTTGTCTCAAAGAAATGGGGTTTCACCGCCTACAATCGTGAAGCTTACC
AAAAATTAAAAGCTGACGGTCGTTTAATGAACGATGGTGCCAACGTTAAAGTCATCACCA
ACCACGGTACTCTTGCTCAATACGCCAAAGATATCGCTGCTGCCAACTAAATAAATTTTT
TATTTAACTCT
sequence update 1999. 4. 9
Translated Amino Acid sequence 
kkkktqkffenfsqtlsfffsh*nfissllvlvipkykkwvvvqldatdiaktnhtsnld
ivvyqmlksefsi*VVRKHQLMNSHYVFISSPSEKEQLSSEAIEAGRISCNKYISKTGGK
DSFHMRVRVHPWHVLRINKMLSCAGADRLQTGMRGAFGKPMGTVARVNIGQIIFSIRTRD
NMLANVVEALRRSSYKFPGRQKIVVSKKWGFTAYNREAYQKLKADGRLMNDGANVKVITN
HGTLAQYAKDIAAAN*inflfns
Translated Amino Acid sequence (All Frames) 
Frame A:
kkkkklknflkifpkpcrfffhikilflhs*f*syqnikngssss*mlqilqkqtihqi*
ilsctrc*nqnfrfrs*esin**ipimcsshlppkknnfhqkplklvvfhvtntsqrlvv
kihst*esefthgtyyvltrcfhalvqidfkpv*evpsvnqwvlllvlilvksfspsepe
iic*ptllklyvdlhtnsqvvkrslsqrngvspptivkltkn*kltvv**tmvptlkssp
ttvlllntpkisllptk*ifylt


Frame B:
kkkknskif*kffpnlvvffftlkfyfftlsfshtki*kmgrrparcyrycknkpyiksr
ycrvpdakirifdlgrkkastdefplcvhlislrkrttfirsh*swsyfm*qihlkdww*
rfiphesqsspmarity*qdafmrwcr*tsnryerclr*tngyccsc*ywsnhflhqnqr
*yvsqrc*sft*ifiqiprsskdrclkemgfhrlqs*slpkiks*rsfnerwcqr*shhq
pryscsirqryrccqlnkffi*l


Frame C:
kkkktqkffenfsqtlsfffsh*nfissllvlvipkykkwvvvqldatdiaktnhtsnld
ivvyqmlksefsi*VVRKHQLMNSHYVFISSPSEKEQLSSEAIEAGRISCNKYISKTGGK
DSFHMRVRVHPWHVLRINKMLSCAGADRLQTGMRGAFGKPMGTVARVNIGQIIFSIRTRD
NMLANVVEALRRSSYKFPGRQKIVVSKKWGFTAYNREAYQKLKADGRLMNDGANVKVITN
HGTLAQYAKDIAAAN*inflfns
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSH847 (SSH847Q) /CSM/SS/SSH8-B/SSH847Q.Seq.d/                       1479   0.0
FC-AS07 (FC-AS07Q) /CSM/FC/FC-AS/FC-AS07Q.Seq.d/                     1324   0.0
FC-303 (FC-303Q) /CSM/CG/CG-FC/FC-303Q.Seq.d/                        1324   0.0
FC-BI12 (FC-BI12Q) /CSM/FC/FC-BI/FC-BI12Q.Seq.d/                     1267   0.0
FC-AV10 (FC-AV10Q) /CSM/FC/FC-AV/FC-AV10Q.Seq.d/                     1237   0.0
VSJ723 (VSJ723Q) /CSM/VS/VSJ7-A/VSJ723Q.Seq.d/                       1191   0.0
AFB142 (AFB142Q) /CSM/AF/AFB1-B/AFB142Q.Seq.d/                       1146   0.0
VSF869 (VSF869Q) /CSM/VS/VSF8-C/VSF869Q.Seq.d/                        991   0.0
SLB744 (SLB744Q) /CSM/SL/SLB7-B/SLB744Q.Seq.d/                        894   0.0
VSE722 (VSE722Q) /CSM/VS/VSE7-A/VSE722Q.Seq.d/                        860   0.0
own update 2001.11.12
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

BP187489|BP187489.1 Dugesia japonica cDNA, clone: 00361_HN, expressed in the head.    58   1e-30  6
BP189345|BP189345.1 Dugesia japonica cDNA, clone: 06358_HH, expressed in the head.    58   3e-28  6
BE587544|BE587544.1 WHE0660_A12_A24ZM Secale cereale root tip cDNA library Secale cereale cDNA clone WHE0660_A12_A24, mRNA sequence.   111   6e-27  3
BG226139|BG226139.1 kq09g06.y1 TBN95TM-SSR Strongyloides stercoralis cDNA 5' similar to WP:F10B5.1 CE01543 60S RIBOSOMAL PROTEIN L10 ;, mRNA sequence.    46   5e-24  7
AA547804|AA547804.1 MB3D6V1B03T3 Brugia malayi day 6 post-infection third stage larvae SAW96MLW-BmL3d6 Brugia malayi cDNA clone 3D6V1B03 5', mRNA sequence.    98   2e-23  2
BG226993|BG226993.1 kp95b10.y1 TBN95TM-SSR Strongyloides stercoralis cDNA 5' similar to WP:F10B5.1 CE01543 60S RIBOSOMAL PROTEIN L10 ;, mRNA sequence.    46   5e-22  7
BE580269|BE580269.1 kq39c02.y1 TBN95TM-SSR Strongyloides stercoralis cDNA 5' similar to WP:F10B5.1 CE01543 60S RIBOSOMAL PROTEIN L10 ;, mRNA sequence.    46   7e-22  7
BQ621908|BQ621908.1 fch1c.pk002.j9 Conidiobolus cornatus ARSEF 512 Conidiobolus coronatus cDNA, mRNA sequence.    62   4e-21  4
BF015078|BF015078.1 kq64a06.y1 TBN95TM-SSR Strongyloides stercoralis cDNA 5' similar to SW:RL10_CAEEL Q09533 60S RIBOSOMAL PROTEIN L10 ;, mRNA sequence.    46   2e-19  6
BG301921|BG301921.1 kt07c01.y1 Strongyloides ratti L3 adult SL1 Topo1 Chiapelli McCarter Strongyloides ratti cDNA 5' similar to SW:RL10_CAEEL Q09533 60S RIBOSOMAL PROTEIN L10 ;, mRNA sequence.    54   5e-19  5
dna update 2004. 1. 9
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT076001_1(BT076001|pid:none) Caligus rogercresseyi clone crog-e...   223   7e-81
EU302535_1(EU302535|pid:none) Lineus viridis ribosomal protein r...   223   7e-81
FB902303_1(FB902303|pid:none) Sequence 121576 from Patent WO2008...   220   7e-81
EF490854_1(EF490854|pid:none) Lepeophtheirus salmonis clone LS00...   220   3e-80
DQ440008_1(DQ440008|pid:none) Aedes aegypti clone AE-200A riboso...   222   3e-80
EU195426_1(EU195426|pid:none) Mucor racemosus strain PTCC 5305 p...   223   5e-80
BT080413_1(BT080413|pid:none) Caligus clemensi clone ccle-evs-51...   219   6e-80
EU045346_1(EU045346|pid:none) Phlebotomus papatasi 60S ribosomal...   222   8e-80
AK339790_1(AK339790|pid:none) Acyrthosiphon pisum ACYPI007451 mR...   221   8e-80
EZ000515_1(EZ000515|pid:none) TSA: Culex tarsalis Ctar-394 60S r...   218   4e-79
protein update 2009. 7. 7
PSORT 

 psg: 0.86  gvh: 0.32  alm: 0.44  top: 0.27  tms: 0.00  mit: 0.38  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: nuclear
	 28.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  8.0 %: vacuolar
	  4.0 %: cytoskeletal
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for SSH847 is nuc
5' end seq. ID SSH847F
5' end seq. 
>SSH847F.Seq
AAAAAAAAAAAAAAACTCAAAAATTTTTTGAAAATTTTTCCCAAACCTTGTCGTTTTTTT
TTTCACATTAAAATTTTATTTCTTCACTCTTAGTTTTAGTCATACCAAAATATAAAAAAT
GGGTCGTCGTCCAGCTAGATGCTACAGATATTGCAAAAACAAACCATACATCAAATCTAG
ATATTGTCGTGGTGTACCAGATGCTAAAATCAGAATTTTCGATTTAGGTCGTAAGAAAGC
ATCAACTGATGAATTCCCATTATGTGTTCATCTCATCTCCCTC----------
Length of 5' end seq. 283
3' end seq. ID SSH847Z
3' end seq. 
>SSH847Z.Seq
----------GTACCAGATGCTAAAATCAGAATTTTCGATTTAGGTCGTAAGAAAGCATC
AACTGATGAATTCCCATTATGTGTTCATCTCATCTCCCTCGAAAAAGAACAACTTTCATC
AGAAGCCATTGAAGCTGGTCGTATTTCATGTAACAAATACATCTCAAAGACTGGTGGTAA
AGATTCATTCCACATGAGAGTCAGAGTTCACCCATGGCACGTATTACGTATTAACAAGAT
GCTTTCATGCGCTGGTGCAGATAGACTTCAAACCGGTATGAGAGGTGCCTTCGGTAAACC
AATGGGTACTGTTGCTCGTGTTAATATTGGTCAAATCATTTTCTCCATCAGAACCAGAGA
TAATATGTTAGCCAACGTTGTTGAAGCTTTACGTAGATCTTCATACAAATTCCCAGGTCG
TCAAAAGATCGTTGTCTCAAAGAAATGGGGTTTCACCGCCTACAATCGTGAAGCTTACCA
AAAATTAAAAGCTGACGGTCGTTTAATGAACGATGGTGCCAACGTTAAAGTCATCACCAA
CCACGGTACTCTTGCTCAATACGCCAAAGATATCGCTGCTGCCAACTAAATAAATTTTTT
ATTTAACTCTAAAAAAAAAA
Length of 3' end seq. 610
Connected seq. ID SSH847P
Connected seq. 
>SSH847P.Seq
AAAAAAAAAAAAAAACTCAAAAATTTTTTGAAAATTTTTCCCAAACCTTGTCGTTTTTTT
TTTCACATTAAAATTTTATTTCTTCACTCTTAGTTTTAGTCATACCAAAATATAAAAAAT
GGGTCGTCGTCCAGCTAGATGCTACAGATATTGCAAAAACAAACCATACATCAAATCTAG
ATATTGTCGTGGTGTACCAGATGCTAAAATCAGAATTTTCGATTTAGGTCGTAAGAAAGC
ATCAACTGATGAATTCCCATTATGTGTTCATCTCATCTCCCTC----------GTACCAG
ATGCTAAAATCAGAATTTTCGATTTAGGTCGTAAGAAAGCATCAACTGATGAATTCCCAT
TATGTGTTCATCTCATCTCCCTCGAAAAAGAACAACTTTCATCAGAAGCCATTGAAGCTG
GTCGTATTTCATGTAACAAATACATCTCAAAGACTGGTGGTAAAGATTCATTCCACATGA
GAGTCAGAGTTCACCCATGGCACGTATTACGTATTAACAAGATGCTTTCATGCGCTGGTG
CAGATAGACTTCAAACCGGTATGAGAGGTGCCTTCGGTAAACCAATGGGTACTGTTGCTC
GTGTTAATATTGGTCAAATCATTTTCTCCATCAGAACCAGAGATAATATGTTAGCCAACG
TTGTTGAAGCTTTACGTAGATCTTCATACAAATTCCCAGGTCGTCAAAAGATCGTTGTCT
CAAAGAAATGGGGTTTCACCGCCTACAATCGTGAAGCTTACCAAAAATTAAAAGCTGACG
GTCGTTTAATGAACGATGGTGCCAACGTTAAAGTCATCACCAACCACGGTACTCTTGCTC
AATACGCCAAAGATATCGCTGCTGCCAACTAAATAAATTTTTTATTTAACTCTAAAAAAA
AAA
Length of connected seq. 893
Full length Seq ID SSH847E
Full length Seq. 
>SSH847E.Seq
AAAAAAAAAAAAAAACTCAAAAATTTTTTGAAAATTTTTCCCAAACCTTGTCGTTTTTTT
TTTCACATTAAAATTTTATTTCTTCACTCTTAGTTTTAGTCATACCAAAATATAAAAAAT
GGGTCGTCGTCCAGCTAGATGCTACAGATATTGCAAAAACAAACCATACATCAAATCTAG
ATATTGTCGTGTACCAGATGCTAAAATCAGAATTTTCGATTTAGGTCGTAAGAAAGCATC
AACTGATGAATTCCCATTATGTGTTCATCTCATCTCCCTCCGAAAAAGAACAACTTTCAT
CAGAAGCCATTGAAGCTGGTCGTATTTCATGTAACAAATACATCTCAAAGACTGGTGGTA
AAGATTCATTCCACATGAGAGTCAGAGTTCACCCATGGCACGTATTACGTATTAACAAGA
TGCTTTCATGCGCTGGTGCAGATAGACTTCAAACCGGTATGAGAGGTGCCTTCGGTAAAC
CAATGGGTACTGTTGCTCGTGTTAATATTGGTCAAATCATTTTCTCCATCAGAACCAGAG
ATAATATGTTAGCCAACGTTGTTGAAGCTTTACGTAGATCTTCATACAAATTCCCAGGTC
GTCAAAAGATCGTTGTCTCAAAGAAATGGGGTTTCACCGCCTACAATCGTGAAGCTTACC
AAAAATTAAAAGCTGACGGTCGTTTAATGAACGATGGTGCCAACGTTAAAGTCATCACCA
ACCACGGTACTCTTGCTCAATACGCCAAAGATATCGCTGCTGCCAACTAAATAAATTTTT
TATTTAACTCT
Length of full length seq. 791