SSH838
Library SS
(Link to library)
Clone ID SSH838
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16296-1
Original site URL
Representative seq. ID SSH838E
(Link to Original site)
Representative DNA sequence
>SSH838 (SSH838Q) /CSM/SS/SSH8-B/SSH838Q.Seq.d/
GTAATGGCTGGGTACATCGTTAGTACTGGACCACTCGCAATTGCTGCTGATGCTGTTGAG
TGGCAATTTTATATTGGTGGTGTATTTGATATTCCATGTAATCCAAATTCACTTGATCAT
GGTATTTTAATTGTTGGTTACTCTGCTAAAAATACAATTTTCCGTAAAAATATGCCATAT
TGGATTGTAAAGAATTCTTGGGGTGCAGATTGGGGAGAACAAGGATACATTTATTTAAGA
AGAGGAAAGAATACATGTGGTGTATCAAACTTTGTTTCAACTAGTATAATTTAAATTTAT
ACCAAATATTTAGTTTAG
sequence update 1998. 2. 4
Translated Amino Acid sequence
VMAGYIVSTGPLAIAADAVEWQFYIGGVFDIPCNPNSLDHGILIVGYSAKNTIFRKNMPY
WIVKNSWGADWGEQGYIYLRRGKNTCGVSNFVSTSII*iytkylv*


Translated Amino Acid sequence (All Frames)
Frame A:
VMAGYIVSTGPLAIAADAVEWQFYIGGVFDIPCNPNSLDHGILIVGYSAKNTIFRKNMPY
WIVKNSWGADWGEQGYIYLRRGKNTCGVSNFVSTSII*iytkylv*


Frame B:
*wlgtslvldhsqlllmllsgnfilvvylifhviqihlimvf*llvtllkiqfsvkichi
gl*rilgvqigenkdtfi*eeerihvvyqtlfqlv*fkfipni*f


Frame C:
ngwvhr*ywttrncc*cc*vailywwci*ysm*skft*swyfncwllc*kynfp*kyail
dckeflgcrlgrtrihlfkkrkeymwciklcfn*ynlnlyqifsl


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSM804 (SSM804Q) /CSM/SS/SSM8-A/SSM804Q.Seq.d/ 630 e-180
SSL190 (SSL190Q) /CSM/SS/SSL1-D/SSL190Q.Seq.d/ 630 e-180
SSK793 (SSK793Q) /CSM/SS/SSK7-D/SSK793Q.Seq.d/ 630 e-180
SSJ694 (SSJ694Q) /CSM/SS/SSJ6-D/SSJ694Q.Seq.d/ 630 e-180
SSH838 (SSH838Q) /CSM/SS/SSH8-B/SSH838Q.Seq.d/ 630 e-180
SSH804 (SSH804Q) /CSM/SS/SSH8-A/SSH804Q.Seq.d/ 630 e-180
SSH510 (SSH510Q) /CSM/SS/SSH5-A/SSH510Q.Seq.d/ 630 e-180
SSG615 (SSG615Q) /CSM/SS/SSG6-A/SSG615Q.Seq.d/ 630 e-180
SSF512 (SSF512Q) /CSM/SS/SSF5-A/SSF512Q.Seq.d/ 630 e-180
SSE603 (SSE603Q) /CSM/SS/SSE6-A/SSE603Q.Seq.d/ 630 e-180

own update 2001.11.12
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

X02407|X02407.1 D.discoideum mRNA for cysteine proteinase 1. 630 e-177 1
AJ510164|AJ510164.1 Cloning vector pDXA-3strep. 216 8e-55 2
X85119|X85119.1 Artificial sequences cloning vector DNA pDXA-3H. 216 8e-55 2
X85122|X85122.1 Artificial sequences cloning vector DNA pDXA-HY. 216 8e-55 2
AJ510165|AJ510165.1 Cloning vector pDXA-3FLAG. 216 8e-55 2
X85118|X85118.1 Artificial sequences cloning vector DNA pDXA-3C. 216 8e-55 2
X85123|X85123.1 Artificial sequences cloning vector DNA pDXA-HC. 216 8e-55 2
AF269236|AF269236.1 Cloning vector pDXA-FLAG, complete sequence. 216 8e-55 2
X85120|X85120.1 Artificial sequences cloning vector DNA pDXD-3H. 216 9e-55 2
AJ510166|AJ510166.1 Cloning vector pDXA-GST. 216 9e-55 2
dna update 2003. 7.28
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(P04988) RecName: Full=Cysteine proteinase 1; EC=3.4.22... 208 5e-53
DQ459306_1(DQ459306|pid:none) Aedes aegypti cathepsin L (CAT-L4)... 110 2e-23
DQ294220_1(DQ294220|pid:none) Glossina morsitans morsitans TC183... 106 3e-22
AY390282_1(AY390282|pid:none) Periserrula leucophryna cysteine p... 102 3e-21
U42758_1(U42758|pid:none) Naegleria fowleri cysteine proteinase ... 101 9e-21
FJ907947_1(FJ907947|pid:none) Drosophila silvestris clone sv3E-Z... 101 9e-21
(Q9VN93) RecName: Full=Putative cysteine proteinase CG12163; ... 100 2e-20
AE014297_190(AE014297|pid:none) Drosophila melanogaster chromoso... 100 2e-20
EF538806_1(EF538806|pid:none) Trypanoplasma borreli cathepsin L ... 100 2e-20
FJ609256_1(FJ609256|pid:none) Solanum lycopersicum cysteine prot... 100 3e-20
protein update 2009. 7. 7
PSORT

psg: 0.90 gvh: 0.52 alm: 0.40 top: 0.27 tms: 0.00 mit: 0.23 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

36.0 %: cytoplasmic
36.0 %: nuclear
12.0 %: extracellular, including cell wall
4.0 %: mitochondrial
4.0 %: vacuolar
4.0 %: vesicles of secretory system
4.0 %: endoplasmic reticulum

>> prediction for SSH838 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SSH838E
Full length Seq.
>SSH838E.Seq
GTAATGGCTGGGTACATCGTTAGTACTGGACCACTCGCAATTGCTGCTGATGCTGTTGAG
TGGCAATTTTATATTGGTGGTGTATTTGATATTCCATGTAATCCAAATTCACTTGATCAT
GGTATTTTAATTGTTGGTTACTCTGCTAAAAATACAATTTTCCGTAAAAATATGCCATAT
TGGATTGTAAAGAATTCTTGGGGTGCAGATTGGGGAGAACAAGGATACATTTATTTAAGA
AGAGGAAAGAATACATGTGGTGTATCAAACTTTGTTTCAACTAGTATAATTTAAATTTAT
ACCAAATATTTAGTTTAG
Length of full length seq. 318