SSH831
Library SS
(Link to library)
Clone ID SSH831
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U13894-1
Original site URL
Representative seq. ID SSH831Z
(Link to Original site)
Representative DNA sequence
>SSH831 (SSH831Q) /CSM/SS/SSH8-B/SSH831Q.Seq.d/
XXXXXXXXXXCAAAATACAAATGTACCAGGTGTCCATGCAGTTGGTGATATTTGTGGTAA
CTTTTTATTAACACCAGTTGCAATCGCTGCTGGTCGTCGTCTTTCTGAACGTCTTTTCAA
TGGAAAATCCGATTTGAAATTCGAATATGAAAATGTTGCAACTGTTGTATTCTCTCATCC
ACCAATTGGTACCGTTGGTTTAACCGAACAAGAAGCAATCACCAAGTATGGTACTGAAAA
TATCAAATGTTACAATACCTCATTCATCAATATGTTTTATTCAGTTCAAGTTCATAAAGT
TAGAACCTCTATGAAATTGGTTTGTTTAGGTAAAGAGGAAAAAGTTATTGGTTTACACAT
TATTGGTGATGGTTGTGATGAAATTATTCAAGGTTTTGCTGTTGCTGTTAAAATGGGTTG
TACAAAATGGGATTTGGATAATACTTGTGCAATTCATCCAACATCTGCAGAAGAACTTGT
AACAATGGTTTAAAAAAAAAAAAAAATAAAAAAATAAAAATAAAGTAAATAATTTAAATT
AAATAATTAAAAAAAACAAAAAAATTAAGTGAAAATCAAAAAAA
sequence update 1998. 2. 4
Translated Amino Acid sequence
---NTNVPGVHAVGDICGNFLLTPVAIAAGRRLSERLFNGKSDLKFEYENVATVVFSHPP
IGTVGLTEQEAITKYGTENIKCYNTSFINMFYSVQVHKVRTSMKLVCLGKEEKVIGLHII
GDGCDEIIQGFAVAVKMGCTKWDLDNTCAIHPTSAEELVTMV*kkkkikk*k*sk*fkln
n*kkqkn*vkikk


Translated Amino Acid sequence (All Frames)
Frame A:
---kiqmyqvsmqlvifvvtfy*hqlqsllvvvflnvfsmenpi*nsnmkmlqllyslih
qlvplv*pnkkqspsmvlkisnvtiphssicfiqfkfiklepl*nwfv*vkrkkllvytl
lvmvvmklfkvlllllkwvvqngiwiilvqfiqhlqknl*qwfkkkkk*knknkvnnln*
iikknkkik*kskk


Frame B:
---kykctrcpcsw*ylw*lfintscnrcwsssf*tsfqwkirfeiri*kccnccilsst
nwyrwfnrtrsnhqvwy*kyqmlqylihqyvlfssss*s*nlyeiglfr*rgksywfthy
w*wl**nysrfcccc*nglykmgfg*ylcnssnicrrtcnnglkkkknkkikik*ii*ik
*lkktkklsenqk


Frame C:
---NTNVPGVHAVGDICGNFLLTPVAIAAGRRLSERLFNGKSDLKFEYENVATVVFSHPP
IGTVGLTEQEAITKYGTENIKCYNTSFINMFYSVQVHKVRTSMKLVCLGKEEKVIGLHII
GDGCDEIIQGFAVAVKMGCTKWDLDNTCAIHPTSAEELVTMV*kkkkikk*k*sk*fkln
n*kkqkn*vkikk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSH831 (SSH831Q) /CSM/SS/SSH8-B/SSH831Q.Seq.d/ 954 0.0
AFO821 (AFO821Q) /CSM/AF/AFO8-A/AFO821Q.Seq.d/ 914 0.0
VFB557 (VFB557Q) /CSM/VF/VFB5-C/VFB557Q.Seq.d/ 729 0.0
AFD460 (AFD460Q) /CSM/AF/AFD4-C/AFD460Q.Seq.d/ 729 0.0
SFF658 (SFF658Q) /CSM/SF/SFF6-C/SFF658Q.Seq.d/ 716 0.0
AFE432 (AFE432Q) /CSM/AF/AFE4-B/AFE432Q.Seq.d/ 704 0.0
AFO542 (AFO542Q) /CSM/AF/AFO5-B/AFO542Q.Seq.d/ 696 0.0
VFB384 (VFB384Q) /CSM/VF/VFB3-D/VFB384Q.Seq.d/ 694 0.0
VFO561 (VFO561Q) /CSM/VF/VFO5-C/VFO561Q.Seq.d/ 678 0.0
VFB667 (VFB667Q) /CSM/VF/VFB6-C/VFB667Q.Seq.d/ 676 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence. 908 0.0 2
AX417043|AX417043.1 Sequence 4034 from Patent WO0228891. 64 7e-07 4
X90528|X90528.1 O.volvulus mRNA for glutathione reductase. 40 1e-06 3
BD263988|BD263988.1 Nucleic acid and protein originating in group B Streptococcus. 46 1e-06 2
AX607669|AX607669.1 Sequence 5598 from Patent WO02092818. 46 1e-06 2
AX134457|AX134457.1 Sequence 21 from Patent WO0132882. 46 1e-06 2
AX417042|AX417042.1 Sequence 4033 from Patent WO0228891. 64 2e-06 1
AL596166|AL596166.1 Listeria innocua Clip11262 complete genome, segment 4/12. 64 2e-06 1
AX417039|AX417039.1 Sequence 4030 from Patent WO0228891. 64 2e-05 2
AE014255|AE014255.1 Streptococcus agalactiae 2603V/R section 65 of 100 of the complete genome. 46 2e-05 2
dna update 2003. 7.31
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q8T137) RecName: Full=Glutathione reductase; Short=GRa... 328 5e-89
AY929277_1(AY929277|pid:none) Cercopithecus aethiops glutathione... 224 1e-57
NRL(1GRH) glutathione reductase (EC 1.6.4.2) (Cys-58 modified by... 224 1e-57
NRL(1GRA) glutathione reductase (EC 1.6.4.2) (oxidized) (with &... 224 1e-57
AF228703_2(AF228703|pid:none) Homo sapiens mitochondrial glutath... 224 1e-57
(P00390) RecName: Full=Glutathione reductase, mitochondrial; ... 224 1e-57
(P47791) RecName: Full=Glutathione reductase, mitochondrial; ... 224 2e-57
S39494(S39494;S39493)glutathione-disulfide reductase (EC 1.8.1.7... 224 2e-57
X76341_1(X76341|pid:none) Mus musculus mRNA for glutathione redu... 224 2e-57
BC056357_1(BC056357|pid:none) Mus musculus glutathione reductase... 224 2e-57
protein update 2009. 6.13
PSORT

psg: 0.84 gvh: 0.58 alm: 0.37 top: 0.53 tms: 0.00 mit: 0.18 mip: 0.06
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: cytoplasmic
32.0 %: nuclear
12.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: Golgi

>> prediction for SSH831 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSH831Z
3' end seq.
>SSH831Z.Seq
----------CAAAATACAAATGTACCAGGTGTCCATGCAGTTGGTGATATTTGTGGTAA
CTTTTTATTAACACCAGTTGCAATCGCTGCTGGTCGTCGTCTTTCTGAACGTCTTTTCAA
TGGAAAATCCGATTTGAAATTCGAATATGAAAATGTTGCAACTGTTGTATTCTCTCATCC
ACCAATTGGTACCGTTGGTTTAACCGAACAAGAAGCAATCACCAAGTATGGTACTGAAAA
TATCAAATGTTACAATACCTCATTCATCAATATGTTTTATTCAGTTCAAGTTCATAAAGT
TAGAACCTCTATGAAATTGGTTTGTTTAGGTAAAGAGGAAAAAGTTATTGGTTTACACAT
TATTGGTGATGGTTGTGATGAAATTATTCAAGGTTTTGCTGTTGCTGTTAAAATGGGTTG
TACAAAATGGGATTTGGATAATACTTGTGCAATTCATCCAACATCTGCAGAAGAACTTGT
AACAATGGTTTAAAAAAAAAAAAAAATAAAAAAATAAAAATAAAGTAAATAATTTAAATT
AAATAATTAAAAAAAACAAAAAAATTAAGTGAAAATCAAAAAAA
Length of 3' end seq. 574
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -