SSH823
Library SS
(Link to library)
Clone ID SSH823
Atlas ID
NBRP ID -
dictyBase ID -
Link to Contig Contig-U04575-1
Original site URL
Representative seq. ID SSH823F
(Link to Original site)
Representative DNA sequence
>SSH823 (SSH823Q) /CSM/SS/SSH8-A/SSH823Q.Seq.d/
GAAAAAAAGAAAACAAAGAAAACCTAATTTTTAAAAAAAAAAATGCAAAANATTATTTTA
GTTATATGCTTAATTTTATCATTGGTATTTATTTCTTATGGAGAACAAACTTCGAGCGCA
AAATGTTACATGAGACTCGATGATTGTGAAAAGATGAGAAAGGCTAGAGAAAAATCAATT
GCTGAXXXXXXXXXX
sequence update 1999. 1.17
Translated Amino Acid sequence
ekkktkkt*FLKKKMQXIILVICLILSLVFISYGEQTSSAKCYMRLDDCEKMRKAREKSI
A---


Translated Amino Acid sequence (All Frames)
Frame A:
ekkktkkt*FLKKKMQXIILVICLILSLVFISYGEQTSSAKCYMRLDDCEKMRKAREKSI
A---


Frame B:
kkrkqrkpnf*kkkckxlf*lya*fyhwylflmenklraqnvt*dsmivkr*erleknql
l---


Frame C:
kkenkenlifkkknakxyfsymlnfiigiyflwrtnferkmlhetr*l*kdekg*rkinc
---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSH823 (SSH823Q) /CSM/SS/SSH8-A/SSH823Q.Seq.d/ 276 1e-73
SSH350 (SSH350Q) /CSM/SS/SSH3-C/SSH350Q.Seq.d/ 276 1e-73
SSE488 (SSE488Q) /CSM/SS/SSE4-D/SSE488Q.Seq.d/ 276 1e-73
SSC518 (SSC518Q) /CSM/SS/SSC5-A/SSC518Q.Seq.d/ 270 7e-72
SSK836 (SSK836Q) /CSM/SS/SSK8-B/SSK836Q.Seq.d/ 268 3e-71
SSB559 (SSB559Q) /CSM/SS/SSB5-C/SSB559Q.Seq.d/ 256 1e-67
SSJ838 (SSJ838Q) /CSM/SS/SSJ8-B/SSJ838Q.Seq.d/ 252 2e-66
VSG296 (VSG296Q) /CSM/VS/VSG2-D/VSG296Q.Seq.d/ 34 0.71
VHQ281 (VHQ281Q) /CSM/VH/VHQ2-D/VHQ281Q.Seq.d/ 34 0.71
VHQ211 (VHQ211Q) /CSM/VH/VHQ2-A/VHQ211Q.Seq.d/ 34 0.71

own update 2002.12.13
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC021416|AC021416.4 Homo sapiens clone RP11-30O7, WORKING DRAFT SEQUENCE, 11 unordered pieces. 44 0.59 1
AL359821|AL359821.11 Human DNA sequence from clone RP11-175G14 on chromosome 1. 44 0.59 1
BX322797|BX322797.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-214H9. 34 0.89 4
AC094170|AC094170.6 Rattus norvegicus clone CH230-2M10, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces. 42 2.3 1
AC119759|AC119759.6 Rattus norvegicus clone CH230-180N2, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces. 42 2.3 1
AL158204|AL158204.7 Human DNA sequence *** SEQUENCING IN PROGRESS *** from clone RP13-267F14. 42 2.3 1
AC095264|AC095264.4 Rattus norvegicus clone CH230-9O3, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces. 42 2.3 1
CC495757|CC495757.1 CH240_331M18.TARBAC13P2 CHORI-240 Bos taurus genomic clone CH240_331M18, genomic survey sequence. 42 2.3 1
AU153543|AU153543.1 Homo sapiens cDNA clone:NT2RP3003403, 3' end, expressed in NT2 neuronal precursor cells after 2-weeks retinoic acid (RA) induction. 42 2.3 1
BD153715|BD153715.1 Primer for synthesizing full-length cDNA and use thereof. 42 2.3 1
dna update 2003. 8. 8
Homology vs Protein

***** No hits found ******

Lambda K H
0.314 0.123 0.344

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3159261
Number of Hits to DB: 177,552,847
protein update 2009. 6.13
PSORT

psg: 0.99 gvh: 0.70 alm: 0.74 top: 0.20 tms: 0.00 mit: 0.32 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

56.0 %: extracellular, including cell wall
12.0 %: cytoplasmic
12.0 %: nuclear
8.0 %: endoplasmic reticulum
4.0 %: Golgi
4.0 %: mitochondrial
4.0 %: vacuolar

>> prediction for SSH823 is exc

5' end seq. ID SSH823F
5' end seq.
>SSH823F.Seq
GAAAAAAAGAAAACAAAGAAAACCTAATTTTTAAAAAAAAAAATGCAAAANATTATTTTA
GTTATATGCTTAATTTTATCATTGGTATTTATTTCTTATGGAGAACAAACTTCGAGCGCA
AAATGTTACATGAGACTCGATGATTGTGAAAAGATGAGAAAGGCTAGAGAAAAATCAATT
GCTGA----------
Length of 5' end seq. 185
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -