>SSH814 (SSH814Q) /CSM/SS/SSH8-A/SSH814Q.Seq.d/
XXXXXXXXXXAACCAGATTGTTGTCATGAATTATTAGGTCATGTTCCATTATTAGCTGAT
CCTGATTTCGCTGATTTTAGTCAAGAGATTGGTTTAGCTTCAATTGGTGCTTCTGATGAA
GATATTCAATTACTTAGTACTTGTTATTGGTTTACAGTTGAATTTGGATTATGTAAAGAA
GGTGATACAATTAGAGCATATGGTGCAGGTATTTTATCATCAACAGGTGAAATGGAACAC
TTTTTAACTGATAAAGCAAAAAAATTACCATTTAATCCATTTGACGCATGCAATACTGAA
TATCCAATTACAACATTCCAACCACTTTACTATGTTGCAGAAAGTTTCCAAAAAGCAAAA
GAACAAATGAGACAATTTGCTGATAGCTTTAAAAAACCATTTTCAATTCGTTACAATCCA
TACACTCAATCAATTGAAATACTTGATAACAAAGATAAATTATTAAATATTTGCAATGAT
ATTAGAAATCAATCTGAAATATTGGCCGATGCAATTTCAAAACTTAAAGCTTAAAAAAA

---PDCCHELLGHVPLLADPDFADFSQEIGLASIGASDEDIQLLSTCYWFTVEFGLCKEG
DTIRAYGAGILSSTGEMEHFLTDKAKKLPFNPFDACNTEYPITTFQPLYYVAESFQKAKE
QMRQFADSFKKPFSIRYNPYTQSIEILDNKDKLLNICNDIRNQSEILADAISKLKA*k

Frame A:
---trlls*iirscsiis*s*fr*f*srdwfsfnwcf**rysit*ylllvys*iwim*rr
*yn*siwcryfiinr*ngtlfn**skkiti*si*rmqy*isnynipttllccrkfpkskr
tnetic**l*ktifnslqsihsin*nt**qr*iikylq*y*ksi*nigrcnfkt*slkk


Frame B:
---PDCCHELLGHVPLLADPDFADFSQEIGLASIGASDEDIQLLSTCYWFTVEFGLCKEG
DTIRAYGAGILSSTGEMEHFLTDKAKKLPFNPFDACNTEYPITTFQPLYYVAESFQKAKE
QMRQFADSFKKPFSIRYNPYTQSIEILDNKDKLLNICNDIRNQSEILADAISKLKA*k


Frame C:
---qivvmny*vmfhy*lilislilvkrlv*lqlvllmkifnylvlviglqlnldyvkkv
iqlehmvqvfyhqqvkwntf*likqknyhlihlthailniqlqhsnhftmlqkvskkqkn
k*dnllialknhfqfvtihtlnqlkylitkiny*ifamileinlkywpmqfqnlklkk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM681 (SSM681Q) /CSM/SS/SSM6-D/SSM681Q.Seq.d/                        993   0.0
SSH814 (SSH814Q) /CSM/SS/SSH8-A/SSH814Q.Seq.d/                        993   0.0
SSL848 (SSL848Q) /CSM/SS/SSL8-B/SSL848Q.Seq.d/                        977   0.0
SFJ456 (SFJ456Q) /CSM/SF/SFJ4-C/SFJ456Q.Seq.d/                        924   0.0
SFK632 (SFK632Q) /CSM/SF/SFK6-B/SFK632Q.Seq.d/                        918   0.0
SFK580 (SFK580Q) /CSM/SF/SFK5-D/SFK580Q.Seq.d/                        918   0.0
SFB840 (SFB840Q) /CSM/SF/SFB8-B/SFB840Q.Seq.d/                        918   0.0
CFE848 (CFE848Q) /CSM/CF/CFE8-B/CFE848Q.Seq.d/                        918   0.0
AFC478 (AFC478Q) /CSM/AF/AFC4-D/AFC478Q.Seq.d/                        918   0.0
SFI142 (SFI142Q) /CSM/SF/SFI1-B/SFI142Q.Seq.d/                        912   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BM900656|BM900656.1 rc40a10.y1 Meloidogyne hapla egg pAMP1 v1 Meloidogyne hapla cDNA 5' similar to TR:Q23438 Q23438 COSMID ZK1290. ;, mRNA sequence.    34  0.004  3
CC852580|CC852580.1 NDL.130C7.T7 Notre Dame Liverpool Aedes aegypti genomic clone NotreDame Liverpool-130C7, genomic survey sequence.    52  0.007  1
CC139550|CC139550.1 NDL.48G14.SP6 Notre Dame Liverpool Aedes aegypti genomic clone NDL.48G14, DNA sequence.    52  0.007  1
BG225890|BG225890.1 kp43a05.y1 TBN95TM-SSFH Strongyloides stercoralis cDNA 5' similar to gb:L29306 TRYPTOPHAN 5-MONOOXYGENASE (HUMAN);, mRNA sequence.    48  0.11  1
AC027017|AC027017.5 Homo sapiens chromosome 8, clone RP11-450M17, complete sequence.    32  0.30  8
AC022238|AC022238.10 Homo sapiens chromosome 13 clone RP11-425G18, WORKING DRAFT SEQUENCE, 4 unordered pieces.    36  0.44  6
AC113807|AC113807.5 Rattus norvegicus clone CH230-297L13, WORKING DRAFT SEQUENCE, 2 unordered pieces.    38  0.44  5
AC044864|AC044864.4 Mus musculus chromosome 12 clone RP23-168E14 map 12, WORKING DRAFT SEQUENCE, 12 unordered pieces.    46  0.44  1
AC102388|AC102388.3 Mus musculus clone RP24-298F19, WORKING DRAFT SEQUENCE, 7 unordered pieces.    46  0.44  1
BH097008|BH097008.1 RPCI-24-298F19.TV RPCI-24 Mus musculus genomic clone RPCI-24-298F19 , DNA sequence.    46  0.44  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54XS1) RecName: Full=Probable phenylalanine-4-hydroxylase;    ...   358   6e-98
BC056537_1(BC056537|pid:none) Danio rerio phenylalanine hydroxyl...   223   3e-57
AY330224_1(AY330224|pid:none) Danio rerio Pah mRNA, complete cds...   223   3e-57
AY615523_1(AY615523|pid:none) Gallus gallus neuronal tryptophan ...   222   5e-57
EU730760_1(EU730760|pid:none) Micropogonias undulatus tryptophan...   221   1e-56
AY616134_1(AY616134|pid:none) Danio rerio tryptophan hydroxylase...   219   3e-56
BX950194_8(BX950194|pid:none) Zebrafish DNA sequence from clone ...   219   3e-56
BX950194_7(BX950194|pid:none) Zebrafish DNA sequence from clone ...   219   3e-56
(Q8IWU9) RecName: Full=Tryptophan 5-hydroxylase 2;          EC=1...   217   1e-55
BC114499_1(BC114499|pid:none) Homo sapiens tryptophan hydroxylas...   217   1e-55

 psg: 0.75  gvh: 0.44  alm: 0.43  top: 0.53  tms: 0.00  mit: 0.23  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: nuclear
	 32.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  8.0 %: vacuolar
	  4.0 %: peroxisomal
	  4.0 %: endoplasmic reticulum

>> prediction for SSH814 is nuc

>SSH814Z.Seq
----------AACCAGATTGTTGTCATGAATTATTAGGTCATGTTCCATTATTAGCTGAT
CCTGATTTCGCTGATTTTAGTCAAGAGATTGGTTTAGCTTCAATTGGTGCTTCTGATGAA
GATATTCAATTACTTAGTACTTGTTATTGGTTTACAGTTGAATTTGGATTATGTAAAGAA
GGTGATACAATTAGAGCATATGGTGCAGGTATTTTATCATCAACAGGTGAAATGGAACAC
TTTTTAACTGATAAAGCAAAAAAATTACCATTTAATCCATTTGACGCATGCAATACTGAA
TATCCAATTACAACATTCCAACCACTTTACTATGTTGCAGAAAGTTTCCAAAAAGCAAAA
GAACAAATGAGACAATTTGCTGATAGCTTTAAAAAACCATTTTCAATTCGTTACAATCCA
TACACTCAATCAATTGAAATACTTGATAACAAAGATAAATTATTAAATATTTGCAATGAT
ATTAGAAATCAATCTGAAATATTGGCCGATGCAATTTCAAAACTTAAAGCTTAAAAAAA