SSH813
Library SS
(Link to library)
Clone ID SSH813
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15626-1
Original site URL
Representative seq. ID SSH813E
(Link to Original site)
Representative DNA sequence
>SSH813 (SSH813Q) /CSM/SS/SSH8-A/SSH813Q.Seq.d/
CTGTTGATTTCTTGGAATTTCGTAATCTTTTAGTACCAGCATCTGGTTTTCAATCGGTAC
AATTTCGTATGATCGAGAATAAGTTGGGTATTCTTCCAAATACACGTGTTCAATATCAAC
AACATCATTATCACTCATTTTTCAATGAAAAAGATCGTAAAGCATTACAAGCAACAGAGA
ATGAAGTATCCTTACTTCAATTGGTAATTCAATGGTTGGAACGTAACCCATTCCTCTATT
ATAAAGGTTACGATTTTTGGTCCTCCTACAAATCAGCTGTCGATCAAATCCTTGAAAATG
ATCTTCAAAGAATTCAAGCAAATAATGATCTCTCTCAAGATATGAAAGATCAATCAACCA
AAGAAGCTAAAAAGAATATGGAATCTTTCTCAACACTTTTCGATGAAGTTGCTTATAATG
AAAGATTNGAAAAAGGTGAAGTTAGATTAAGTTATAAAGCATTACAATCAGCAATTTTAA
TTTATTTATATAAAGATGAACCAATTTTCCATACACCATTCCTTATTTTAAATCTTTTAA
CAGAAATTGATGAATTATTAACAATGTGGAGATTCCGTCATACAATGATGGTACAAAGAA
TTATTGGTGCCAAGATTGGTACTGGTGGTTCTTCTGGTTATCATTATTTACGTACAACCG
TTGGTGATCGTTATAAAATTTTCTTGGATTTATTCAATATTTCCAGTTATTTAATTCCAA
AAAATACACTTCCACAATTACCAAAAGTTGTTAAAGAACAAATGGATTTCGCTTGGTCAA
TTTTGTAATAAGTTTAAAAAAAAAAAAATAATAATAATAATAATAATAATAATAATAAAT
AATTATTAATAATAATAATTATATTAATTTTAAAATTAAAATAAAATTTTGGAAAAAAAA
AAAAAAGTAATATTTTATATTCTAAAAAAAAA
sequence update 2001. 3. 2
Translated Amino Acid sequence
VDFLEFRNLLVPASGFQSVQFRMIENKLGILPNTRVQYQQHHYHSFFNEKDRKALQATEN
EVSLLQLVIQWLERNPFLYYKGYDFWSSYKSAVDQILENDLQRIQANNDLSQDMKDQSTK
EAKKNMESFSTLFDEVAYNERXEKGEVRLSYKALQSAILIYLYKDEPIFHTPFLILNLLT
EIDELLTMWRFRHTMMVQRIIGAKIGTGGSSGYHYLRTTVGDRYKIFLDLFNISSYLIPK
NTLPQLPKVVKEQMDFAWSIL**v*kkknnnnnnnnnnk*lliiiiililklk*nfgkkk
ksnilyskkk


Translated Amino Acid sequence (All Frames)
Frame A:
lliswnfvif*yqhlvfnrynfv*sriswvffqihvfninniiithfsmkkivkhykqqr
mkypyfnw*fngwnvthssiikvtifgpptnqlsikslkmifkefkqimislki*kinqp
kklkriwnlsqhfsmkllimkdxkkvkld*vikhynqqf*fiyikmnqfsihhslf*if*
qklmny*qcgdsviq*wykellvprlvlvvllviiiyvqplvivikfswiysifpvi*fq
kihfhnyqkllknkwislgqfcnkfkkkkiiiiiiiiiinny****ly*f*n*nkilekk
kkvifyilkk


Frame B:
c*flgis*sfstsiwfsigtisydre*vgysskytcsisttslslifq*krs*sitsnre
*siltsignsmvgt*pipll*rlrflvllqiscrsnp*k*ssknssk**slsryersinq
rs*keygiflntfr*scl**kixkr*s*ikl*sitisnfnlfi*r*tnfpytipyfksfn
rn**iinnveipsyndgtknywcqdwywwffwlslftynrw*sl*nflgfiqyfqlfnsk
kytstitksc*rtngfrlvnfvislkkkk**********iiinnnnyinfkikikfwkkk
kk*yfif*kk


Frame C:
VDFLEFRNLLVPASGFQSVQFRMIENKLGILPNTRVQYQQHHYHSFFNEKDRKALQATEN
EVSLLQLVIQWLERNPFLYYKGYDFWSSYKSAVDQILENDLQRIQANNDLSQDMKDQSTK
EAKKNMESFSTLFDEVAYNERXEKGEVRLSYKALQSAILIYLYKDEPIFHTPFLILNLLT
EIDELLTMWRFRHTMMVQRIIGAKIGTGGSSGYHYLRTTVGDRYKIFLDLFNISSYLIPK
NTLPQLPKVVKEQMDFAWSIL**v*kkknnnnnnnnnnk*lliiiiililklk*nfgkkk
ksnilyskkk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSH813 (SSH813Q) /CSM/SS/SSH8-A/SSH813Q.Seq.d/ 1570 0.0
AFN150 (AFN150Q) /CSM/AF/AFN1-C/AFN150Q.Seq.d/ 934 0.0
AFJ375 (AFJ375Q) /CSM/AF/AFJ3-D/AFJ375Q.Seq.d/ 856 0.0
AFO124 (AFO124Q) /CSM/AF/AFO1-A/AFO124Q.Seq.d/ 759 0.0
VSF818 (VSF818Q) /CSM/VS/VSF8-A/VSF818Q.Seq.d/ 446 e-124
SSK310 (SSK310Q) /CSM/SS/SSK3-A/SSK310Q.Seq.d/ 40 0.059
SSH180 (SSH180Q) /CSM/SS/SSH1-D/SSH180Q.Seq.d/ 40 0.059
SSC378 (SSC378Q) /CSM/SS/SSC3-D/SSC378Q.Seq.d/ 40 0.059
SSB684 (SSB684Q) /CSM/SS/SSB6-D/SSB684Q.Seq.d/ 40 0.059
SHA331 (SHA331Q) /CSM/SH/SHA3-B/SHA331Q.Seq.d/ 40 0.059

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC115598|AC115598.2 Dictyostelium discoideum chromosome 2 map 581427-735498 strain AX4, complete sequence. 34 4e-05 12
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence. 34 0.001 16
AL049184|AL049184.5 Plasmodium falciparum DNA *** SEQUENCING IN PROGRESS *** from MAL13P3. 34 0.002 10
AC117072|AC117072.2 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence. 32 0.005 12
AP003194|AP003194.2 Clostridium perfringens str. 13 DNA, complete genome, section 10/10. 38 0.011 9
AL844509|AL844509.1 Plasmodium falciparum chromosome 13. 36 0.021 21
AC115577|AC115577.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence. 38 0.022 13
AC134824|AC134824.16 Medicago truncatula clone mth2-14a2, WORKING DRAFT SEQUENCE, 5 unordered pieces. 38 0.054 7
AP004170|AP004170.1 Mycoplasma penetrans genomic DNA, complete sequence, section 1/5. 34 0.059 13
AL034556|AL034556.4 Plasmodium falciparum MAL3P5. 32 0.10 8
dna update 2004. 1. 9
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q55DB4) RecName: Full=Tryptophan 2,3-dioxygenase; Shor... 523 e-147
AY965263_1(AY965263|pid:none) Chlamys farreri tryptophan 2,3-dio... 254 2e-66
(P48775) RecName: Full=Tryptophan 2,3-dioxygenase; Shor... 250 4e-65
(Q2KIQ5) RecName: Full=Tryptophan 2,3-dioxygenase; Shor... 249 9e-65
(P48776) RecName: Full=Tryptophan 2,3-dioxygenase; Shor... 248 3e-64
(Q7SY53) RecName: Full=Tryptophan 2,3-dioxygenase B; Sh... 247 5e-64
U24493_1(U24493|pid:none) Mouse tryptophan-2,3-dioxygenase (TDO)... 247 5e-64
(P21643) RecName: Full=Tryptophan 2,3-dioxygenase; Shor... 246 1e-63
(Q5EBG2) RecName: Full=Tryptophan 2,3-dioxygenase; Shor... 243 7e-63
(B4IDV8) RecName: Full=Tryptophan 2,3-dioxygenase; Shor... 240 4e-62
protein update 2009. 7. 7
PSORT

psg: 0.75 gvh: 0.50 alm: 0.42 top: 0.53 tms: 0.00 mit: 0.20 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.33 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: nuclear
36.0 %: cytoplasmic
8.0 %: cytoskeletal
8.0 %: mitochondrial
8.0 %: vacuolar

>> prediction for SSH813 is nuc

5' end seq. ID SSH813F
5' end seq.
>SSH813F.Seq
CTGTTGATTTCTTGGAATTTCGTAATCTTTTAGTACCAGCATCTGGTTTTCAATCGGTAC
AATTTCGTATGATCGAGAATAAGTTGGGTATTCTTCCAAATACACGTGTTCAATATCAAC
AACATCATTATCACTCATTTTTCAATGAAAAAGATCGTAAAGCATTACAAGCAACAGAGA
ATGAAGTATCCTTACTTCAATTGGTAATTCAATGGTTGGAACGTAACCCATTCCTCTATT
ATAAAGGTTACGATTTTTGGTCCTCCTACAAATCAGCTGTCGATCAAATCCTTGAAAATG
ATCTTCAAAGAATTCAAGCAAATAATGATCTCTCTCAAGATATGAAAGATCAATCAACCA
AAGAAGCTAAAAAGAATATGGAATCTTTCTCAACACTTTTCGATGAAGTTGCTTATAATG
AAAGATTAGAAAAAGGTGAAGTTAGATTAAGTTATAAAGCATTACAATCAGCAATTTTAA
TTTATTTATATAAAGATGAACCAATTTTC----------
Length of 5' end seq. 509
3' end seq. ID SSH813Z
3' end seq.
>SSH813Z.Seq
----------AATATGGAATCTTTCTCAACACTTTTCGATGAAGTTGCTTATAATGAAAG
ATTGGAAAAAGGTGAAGTTAGATTAAGTTATAAAGCATTACAATCAGCAATTTTAATTTA
TTTATATAAAGATGAACCAATTTTCCATACACCATTCCTTATTTTAAATCTTTTAACAGA
AATTGATGAATTATTAACAATGTGGAGATTCCGTCATACAATGATGGTACAAAGAATTAT
TGGTGCCAAGATTGGTACTGGTGGTTCTTCTGGTTATCATTATTTACGTACAACCGTTGG
TGATCGTTATAAAATTTTCTTGGATTTATTCAATATTTCCAGTTATTTAATTCCAAAAAA
TACACTTCCACAATTACCAAAAGTTGTTAAAGAACAAATGGATTTCGCTTGGTCAATTTT
GTAATAAGTTTAAAAAAAAAAAAATAATAATAATAATAATAATAATAATAATAAATAATT
ATTAATAATAATAATTATATTAATTTTAAAATTAAAATAAAATTTTGGAAAAAAAAAAAA
AAGTAATATTTTATATTCTAAAAAAAAA
Length of 3' end seq. 558
Connected seq. ID SSH813P
Connected seq.
>SSH813P.Seq
CTGTTGATTTCTTGGAATTTCGTAATCTTTTAGTACCAGCATCTGGTTTTCAATCGGTAC
AATTTCGTATGATCGAGAATAAGTTGGGTATTCTTCCAAATACACGTGTTCAATATCAAC
AACATCATTATCACTCATTTTTCAATGAAAAAGATCGTAAAGCATTACAAGCAACAGAGA
ATGAAGTATCCTTACTTCAATTGGTAATTCAATGGTTGGAACGTAACCCATTCCTCTATT
ATAAAGGTTACGATTTTTGGTCCTCCTACAAATCAGCTGTCGATCAAATCCTTGAAAATG
ATCTTCAAAGAATTCAAGCAAATAATGATCTCTCTCAAGATATGAAAGATCAATCAACCA
AAGAAGCTAAAAAGAATATGGAATCTTTCTCAACACTTTTCGATGAAGTTGCTTATAATG
AAAGATTAGAAAAAGGTGAAGTTAGATTAAGTTATAAAGCATTACAATCAGCAATTTTAA
TTTATTTATATAAAGATGAACCAATTTTC----------AATATGGAATCTTTCTCAACA
CTTTTCGATGAAGTTGCTTATAATGAAAGATTGGAAAAAGGTGAAGTTAGATTAAGTTAT
AAAGCATTACAATCAGCAATTTTAATTTATTTATATAAAGATGAACCAATTTTCCATACA
CCATTCCTTATTTTAAATCTTTTAACAGAAATTGATGAATTATTAACAATGTGGAGATTC
CGTCATACAATGATGGTACAAAGAATTATTGGTGCCAAGATTGGTACTGGTGGTTCTTCT
GGTTATCATTATTTACGTACAACCGTTGGTGATCGTTATAAAATTTTCTTGGATTTATTC
AATATTTCCAGTTATTTAATTCCAAAAAATACACTTCCACAATTACCAAAAGTTGTTAAA
GAACAAATGGATTTCGCTTGGTCAATTTTGTAATAAGTTTAAAAAAAAAAAAATAATAAT
AATAATAATAATAATAATAATAAATAATTATTAATAATAATAATTATATTAATTTTAAAA
TTAAAATAAAATTTTGGAAAAAAAAAAAAAAGTAATATTTTATATTCTAAAAAAAAA
Length of connected seq. 1067
Full length Seq ID SSH813E
Full length Seq.
>SSH813E.Seq
CTGTTGATTTCTTGGAATTTCGTAATCTTTTAGTACCAGCATCTGGTTTTCAATCGGTAC
AATTTCGTATGATCGAGAATAAGTTGGGTATTCTTCCAAATACACGTGTTCAATATCAAC
AACATCATTATCACTCATTTTTCAATGAAAAAGATCGTAAAGCATTACAAGCAACAGAGA
ATGAAGTATCCTTACTTCAATTGGTAATTCAATGGTTGGAACGTAACCCATTCCTCTATT
ATAAAGGTTACGATTTTTGGTCCTCCTACAAATCAGCTGTCGATCAAATCCTTGAAAATG
ATCTTCAAAGAATTCAAGCAAATAATGATCTCTCTCAAGATATGAAAGATCAATCAACCA
AAGAAGCTAAAAAGAATATGGAATCTTTCTCAACACTTTTCGATGAAGTTGCTTATAATG
AAAGATTNGAAAAAGGTGAAGTTAGATTAAGTTATAAAGCATTACAATCAGCAATTTTAA
TTTATTTATATAAAGATGAACCAATTTTCCATACACCATTCCTTATTTTAAATCTTTTAA
CAGAAATTGATGAATTATTAACAATGTGGAGATTCCGTCATACAATGATGGTACAAAGAA
TTATTGGTGCCAAGATTGGTACTGGTGGTTCTTCTGGTTATCATTATTTACGTACAACCG
TTGGTGATCGTTATAAAATTTTCTTGGATTTATTCAATATTTCCAGTTATTTAATTCCAA
AAAATACACTTCCACAATTACCAAAAGTTGTTAAAGAACAAATGGATTTCGCTTGGTCAA
TTTTGTAATAAGTTTAAAAAAAAAAAAATAATAATAATAATAATAATAATAATAATAAAT
AATTATTAATAATAATAATTATATTAATTTTAAAATTAAAATAAAATTTTGGAAAAAAAA
AAAAAAGTAATATTTTATATTCTAAAAAAAAA
Length of full length seq. 932