>SSH804 (SSH804Q) /CSM/SS/SSH8-A/SSH804Q.Seq.d/
XXXXXXXXXXTAGTTTCATTATCAGAGCAAAACTTGGTAGATTGTGATCATGAGTGTATG
GAATATGAAGGTGAACAAGCTTGTGATGAGGGTTGTAATGGTGGTCTTCAACCAAATGCA
TATAATTATATCATTAAAAATGGTGGAATTCAAACAGAATCTTCATATCCTTACACTGCT
GAAACAGGTACACAATGTAACTTTAACTCTGCCAATATTGGTGCAAAGATTTCCAATTTT
ACAATGATCCCAAAGAATGAAACTGTAATGGCTGGGTACATCGTTAGTACTGGACCACTC
GCAATTGCTGCTGATGCTGTTGAGTGGCAATTTTATATTGGTGGTGTATTTGATATTCCA
TGTAATCCAAATTCACTTGATCATGGTATTTTAATTGTTGGTTACTCTGCTAAAAATACA
ATTTTCCGTAAAAATATGCCATATTGGATTGTAAAGAATTCTTGGGGTGCAGATTGGGGA
GAACAAGGATACATTTATTTAAGAAGAGGAAAGAATACATGTGGTGTATCAAACTTTGTT
TCAACTAGTATAATTTAAATTTATACCAAATATTTAGTTTAGAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAGAATTTAAAAATAAATAAAATTTTTTATTAAATCTAA

---VSLSEQNLVDCDHECMEYEGEQACDEGCNGGLQPNAYNYIIKNGGIQTESSYPYTAE
TGTQCNFNSANIGAKISNFTMIPKNETVMAGYIVSTGPLAIAADAVEWQFYIGGVFDIPC
NPNSLDHGILIVGYSAKNTIFRKNMPYWIVKNSWGADWGEQGYIYLRRGKNTCGVSNFVS
TSII*iytkylv*kkkkkkkkkkknlkinkify*i*

Frame A:
---sfiiraklgrl*s*vygi*r*tsl**gl*wwsstkci*lyh*kwwnsnrifislhc*
nrytm*l*lcqywckdfqfyndpke*ncngwvhr*ywttrncc*cc*vailywwci*ysm
*skft*swyfncwllc*kynfp*kyaildckeflgcrlgrtrihlfkkrkeymwciklcf
n*ynlnlyqifslekkkkkkkkkkefknk*nfllnl


Frame B:
---VSLSEQNLVDCDHECMEYEGEQACDEGCNGGLQPNAYNYIIKNGGIQTESSYPYTAE
TGTQCNFNSANIGAKISNFTMIPKNETVMAGYIVSTGPLAIAADAVEWQFYIGGVFDIPC
NPNSLDHGILIVGYSAKNTIFRKNMPYWIVKNSWGADWGEQGYIYLRRGKNTCGVSNFVS
TSII*iytkylv*kkkkkkkkkkknlkinkify*i*


Frame C:
---fhyqsktw*ivimsvwnmkvnklvmrvvmvvfnqmhiiislkmvefkqnlhiltllk
qvhnvtltlpilvqrfpilq*sqrmkl*wlgtslvldhsqlllmllsgnfilvvylifhv
iqihlimvf*llvtllkiqfsvkichigl*rilgvqigenkdtfi*eeerihvvyqtlfq
lv*fkfipni*frkkkkkkkkkkri*k*ikffiks

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM804 (SSM804Q) /CSM/SS/SSM8-A/SSM804Q.Seq.d/                       1134   0.0
SSJ694 (SSJ694Q) /CSM/SS/SSJ6-D/SSJ694Q.Seq.d/                       1134   0.0
SSH804 (SSH804Q) /CSM/SS/SSH8-A/SSH804Q.Seq.d/                       1134   0.0
SSG615 (SSG615Q) /CSM/SS/SSG6-A/SSG615Q.Seq.d/                       1134   0.0
SSE603 (SSE603Q) /CSM/SS/SSE6-A/SSE603Q.Seq.d/                       1134   0.0
SSE172 (SSE172Q) /CSM/SS/SSE1-C/SSE172Q.Seq.d/                       1134   0.0
SSA534 (SSA534Q) /CSM/SS/SSA5-B/SSA534Q.Seq.d/                       1122   0.0
AFE263 (AFE263Q) /CSM/AF/AFE2-C/AFE263Q.Seq.d/                       1118   0.0
AHL332 (AHL332Q) /CSM/AH/AHL3-B/AHL332Q.Seq.d/                       1114   0.0
SFA691 (SFA691Q) /CSM/SF/SFA6-D/SFA691Q.Seq.d/                       1112   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

X02407|X02407.1 D.discoideum mRNA for cysteine proteinase 1.    1126  0.0  1
AJ510164|AJ510164.1 Cloning vector pDXA-3strep.                  216  4e-54  2
X85119|X85119.1 Artificial sequences cloning vector DNA pDXA-3H.   216  4e-54  2
X85122|X85122.1 Artificial sequences cloning vector DNA pDXA-HY.   216  4e-54  2
AJ510165|AJ510165.1 Cloning vector pDXA-3FLAG.                   216  4e-54  2
X85118|X85118.1 Artificial sequences cloning vector DNA pDXA-3C.   216  4e-54  2
X85123|X85123.1 Artificial sequences cloning vector DNA pDXA-HC.   216  4e-54  2
AF269236|AF269236.1 Cloning vector pDXA-FLAG, complete sequence.   216  4e-54  2
X85120|X85120.1 Artificial sequences cloning vector DNA pDXD-3H.   216  4e-54  2
AJ510166|AJ510166.1 Cloning vector pDXA-GST.                     216  4e-54  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P04988) RecName: Full=Cysteine proteinase 1;          EC=3.4.22...   385   e-106
U42758_1(U42758|pid:none) Naegleria fowleri cysteine proteinase ...   203   4e-51
FB844544_1(FB844544|pid:none) Sequence 63817 from Patent WO20080...   194   2e-48
AF167986_1(AF167986|pid:none) Glycine max putative cysteine prot...   193   4e-48
BT071299_1(BT071299|pid:none) Picea sitchensis clone WS02822_C20...   187   2e-46
AJ580823_3(AJ580823|pid:none) Lotus corniculatus var. japonicus ...   186   4e-46
FJ609256_1(FJ609256|pid:none) Solanum lycopersicum cysteine prot...   185   1e-45
AJ580823_4(AJ580823|pid:none) Lotus corniculatus var. japonicus ...   184   2e-45
AB267820_1(AB267820|pid:none) Ipomoea nil In15 mRNA for cysteine...   184   2e-45
AB270920_1(AB270920|pid:none) Phaseolus vulgaris CP2 gene for cy...   183   3e-45

 psg: 0.75  gvh: 0.21  alm: 0.38  top: 0.53  tms: 0.00  mit: 0.20  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: nuclear
	 36.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: vacuolar

>> prediction for SSH804 is nuc

>SSH804Z.Seq
----------TAGTTTCATTATCAGAGCAAAACTTGGTAGATTGTGATCATGAGTGTATG
GAATATGAAGGTGAACAAGCTTGTGATGAGGGTTGTAATGGTGGTCTTCAACCAAATGCA
TATAATTATATCATTAAAAATGGTGGAATTCAAACAGAATCTTCATATCCTTACACTGCT
GAAACAGGTACACAATGTAACTTTAACTCTGCCAATATTGGTGCAAAGATTTCCAATTTT
ACAATGATCCCAAAGAATGAAACTGTAATGGCTGGGTACATCGTTAGTACTGGACCACTC
GCAATTGCTGCTGATGCTGTTGAGTGGCAATTTTATATTGGTGGTGTATTTGATATTCCA
TGTAATCCAAATTCACTTGATCATGGTATTTTAATTGTTGGTTACTCTGCTAAAAATACA
ATTTTCCGTAAAAATATGCCATATTGGATTGTAAAGAATTCTTGGGGTGCAGATTGGGGA
GAACAAGGATACATTTATTTAAGAAGAGGAAAGAATACATGTGGTGTATCAAACTTTGTT
TCAACTAGTATAATTTAAATTTATACCAAATATTTAGTTTAGAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAGAATTTAAAAATAAATAAAATTTTTTATTAAATCTAA