>SSH793 (SSH793Q) /CSM/SS/SSH7-D/SSH793Q.Seq.d/
XXXXXXXXXXGTAAGATTGTTGATATGTCAACTTCCAAAACCGGTAAACACGGTCACGCC
AAAGTTAACATCACTGCTATCGATATCTTCACTGGTAAGAAATACGAAGAAATTTGCCCA
TCAACTCACAACATTGATGTACCAAATGTCAGCAGAAAGGAATACACCGTTATGGATGTT
CAAGATGGTTACTTATCACTCTTGGATGCTGGTGGTGAAGTCAAAGAAGATCTTGCCCTC
CCAGAAGATGATATTGGTAAAGAAATTACCCAAATGTTAAAAGAAGGTAAAGAGCCATTA
GTTTCAGTCATCTCTGCTTTAGGTAAAGAAGGTGTCGTCTCTGTTAAAGTCAGCAACAAT
TAAATTGTTTAAAATTCTCTTTATA

---KIVDMSTSKTGKHGHAKVNITAIDIFTGKKYEEICPSTHNIDVPNVSRKEYTVMDVQ
DGYLSLLDAGGEVKEDLALPEDDIGKEITQMLKEGKEPLVSVISALGKEGVVSVKVSNN*
iv*nsly

Frame A:
---*dc*yvnfqnr*trsrqs*hhcyrylhw*eirrnlpinsqh*ctkcqqkgihrygcs
rwllitlgcww*sqrrscpprr*yw*rnypnvkrr*raisfshlcfr*rrcrlc*sqqql
nclkfsl


Frame B:
---KIVDMSTSKTGKHGHAKVNITAIDIFTGKKYEEICPSTHNIDVPNVSRKEYTVMDVQ
DGYLSLLDAGGEVKEDLALPEDDIGKEITQMLKEGKEPLVSVISALGKEGVVSVKVSNN*
iv*nsly


Frame C:
---rllicqlpkpvntvtpkltsllsisslvrntkkfahqlttlmyqmsaerntplwmfk
mvtyhswmlvvkskkilpsqkmilvkklpkc*kkvksh*fqssll*vkkvssllksatik
lfkilfi

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSG552 (VSG552Q) /CSM/VS/VSG5-C/VSG552Q.Seq.d/                        743   0.0
VSE750 (VSE750Q) /CSM/VS/VSE7-C/VSE750Q.Seq.d/                        743   0.0
VSE691 (VSE691Q) /CSM/VS/VSE6-D/VSE691Q.Seq.d/                        743   0.0
VSE527 (VSE527Q) /CSM/VS/VSE5-B/VSE527Q.Seq.d/                        743   0.0
VSE475 (VSE475Q) /CSM/VS/VSE4-D/VSE475Q.Seq.d/                        743   0.0
VSD448 (VSD448Q) /CSM/VS/VSD4-B/VSD448Q.Seq.d/                        743   0.0
VSD284 (VSD284Q) /CSM/VS/VSD2-D/VSD284Q.Seq.d/                        743   0.0
VSA438 (VSA438Q) /CSM/VS/VSA4-B/VSA438Q.Seq.d/                        743   0.0
VHD324 (VHD324Q) /CSM/VH/VHD3-A/VHD324Q.Seq.d/                        743   0.0
SSL858 (SSL858Q) /CSM/SS/SSL8-C/SSL858Q.Seq.d/                        743   0.0

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

X14970|X14970.1 Dictyostelium discoideum mRNA for translation initiation factor  eIF-4D.   741  0.0  1
AX001144|AX001144.1 Sequence 5 from Patent WO9901551.            700  0.0  1
AR228401|AR228401.1 Sequence 5 from patent US 6448040.           700  0.0  1
AL967179|AL967179.1 Xenopus tropicalis EST, clone TGas120d02 5'.    64  1e-15  2
BQ393903|BQ393903.1 NISC_ng06b03.y1 NICHD XGC Emb6 Silurana tropicalis cDNA clone IMAGE:5382461 5', mRNA sequence.    64  1e-15  2
BQ392519|BQ392519.1 NISC_mq24h09.y1 NICHD XGC Emb5 Silurana tropicalis cDNA clone IMAGE:5309441 5', mRNA sequence.    64  1e-15  2
BQ392479|BQ392479.1 NISC_mq24f12.y1 NICHD XGC Emb5 Silurana tropicalis cDNA clone IMAGE:5309351 5', mRNA sequence.    64  1e-15  2
AL779547|AL779547.1 Xenopus tropicalis EST, clone TNeu073o23 5'.    64  1e-15  2
AL777624|AL777624.1 Xenopus tropicalis EST, clone TNeu063b07 5'.    64  1e-15  2
AL678685|AL678685.1 Xenopus tropicalis EST, clone TNeu054c05 5'.    64  1e-15  2

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P10160) RecName: Full=Eukaryotic translation initiation factor ...   150   1e-35
AL596185_11(AL596185|pid:none) Mouse DNA sequence from clone RP2...   149   3e-35
(P63241) RecName: Full=Eukaryotic translation initiation factor ...   149   3e-35
AY129319_1(AY129319|pid:none) Homo sapiens eukaryotic initiation...   149   3e-35
BC070048_1(BC070048|pid:none) Homo sapiens eukaryotic translatio...   146   2e-34
(Q6IS14) RecName: Full=Eukaryotic translation initiation factor ...   146   2e-34
S72024_1(S72024|pid:none) eif-5A=eukaryotic initiation factor 5A...   145   3e-34
(Q07460) RecName: Full=Eukaryotic translation initiation factor ...   145   4e-34
BT075853_1(BT075853|pid:none) Caligus rogercresseyi clone crog-e...   145   6e-34
FM992693_140(FM992693|pid:none) Candida dubliniensis CD36 chromo...   144   1e-33

 psg: 0.56  gvh: 0.27  alm: 0.39  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 52.0 %: cytoplasmic
	 32.0 %: nuclear
	  8.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: peroxisomal

>> prediction for SSH793 is cyt

>SSH793Z.Seq
----------GTAAGATTGTTGATATGTCAACTTCCAAAACCGGTAAACACGGTCACGCC
AAAGTTAACATCACTGCTATCGATATCTTCACTGGTAAGAAATACGAAGAAATTTGCCCA
TCAACTCACAACATTGATGTACCAAATGTCAGCAGAAAGGAATACACCGTTATGGATGTT
CAAGATGGTTACTTATCACTCTTGGATGCTGGTGGTGAAGTCAAAGAAGATCTTGCCCTC
CCAGAAGATGATATTGGTAAAGAAATTACCCAAATGTTAAAAGAAGGTAAAGAGCCATTA
GTTTCAGTCATCTCTGCTTTAGGTAAAGAAGGTGTCGTCTCTGTTAAAGTCAGCAACAAT
TAAATTGTTTAAAATTCTCTTTATA