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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSH791
Library SS
(Link to library)
Clone ID SSH791
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U03296-1
Original site URL
Representative seq. ID SSH791E
(Link to Original site)
Representative DNA sequence 
>SSH791 (SSH791Q) /CSM/SS/SSH7-D/SSH791Q.Seq.d/
ATCATATATATATAAAATAATATTACATTAAAATGAATTACGAAGACGACAACGTTGAAT
CAGGACAAGCTGGTAAATCAGATGCTGAATACAAAGCAGATATTGCCAATAGAGAAAAAG
AAGTAACCAAAGCATTAAATGCTGGTAAACCACAAGATGCTTTAAATGTAGCCTTAGCTG
ATCCACCAATTTACACTAAAACAGGTGCAATCAAGGATCAAAATGCAACCATTGTCCTCA
ATCTTTTAGGTAGTTTTAAAGATAAAGATGTTGAAACATCAGTCGAAACACTCAACGATG
ACCAACTCGATATTTTAATGAAATATGTCTACCGTGGTCTTGCTACCGGTGAAAATTCAC
CAATCTTTTTCAAATGGCACGAATGTGTCCTCAAGAAGGGTGGTGCTGGTACAATCATTA
GAGTTATCTCTGAAAAGAAAACTGTTTAAGCAATTATCAATCCGAATCTGTAACCATTAA
AAAATAGATTTCTATTTATTAAAA
sequence update 1999. 6.22
Translated Amino Acid sequence 
hiyik*YYIKMNYEDDNVESGQAGKSDAEYKADIANREKEVTKALNAGKPQDALNVALAD
PPIYTKTGAIKDQNATIVLNLLGSFKDKDVETSVETLNDDQLDILMKYVYRGLATGENSP
IFFKWHECVLKKGGAGTIIRVISEKKTV*aiinpnl*plknrflfik
Translated Amino Acid sequence (All Frames) 
Frame A:
iiyi*nnitlk*itktttlnqdklvnqmlntkqilpiekkk*pkh*mlvnhkml*m*p*l
ihqftlkqvqsrikmqplssif*vvlkikmlkhqskhstmtnsif**nmstvvllpvkih
qsfsngtnvssrrvvlvqslelslkrklfkqlsiricnh*kidfyllk


Frame B:
syiykiilh*nelrrrqr*irtsw*irc*iqsrycq*rkrsnqsikcw*ttrcfkcsls*
stnlh*nrcnqgskcnhcpqsfr*f*r*rc*nisrntqr*ptryfneiclpwscyr*kft
nlfqmarmcpqegwcwynh*syl*kenclsnyqsesvtikk*isiy*


Frame C:
hiyik*YYIKMNYEDDNVESGQAGKSDAEYKADIANREKEVTKALNAGKPQDALNVALAD
PPIYTKTGAIKDQNATIVLNLLGSFKDKDVETSVETLNDDQLDILMKYVYRGLATGENSP
IFFKWHECVLKKGGAGTIIRVISEKKTV*aiinpnl*plknrflfik
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSL655 (SSL655Q) /CSM/SS/SSL6-C/SSL655Q.Seq.d/                        999   0.0
SSH791 (SSH791Q) /CSM/SS/SSH7-D/SSH791Q.Seq.d/                        999   0.0
VSG195 (VSG195Q) /CSM/VS/VSG1-D/VSG195Q.Seq.d/                        969   0.0
VSJ381 (VSJ381Q) /CSM/VS/VSJ3-D/VSJ381Q.Seq.d/                        902   0.0
SSG116 (SSG116Q) /CSM/SS/SSG1-A/SSG116Q.Seq.d/                        872   0.0
VSG334 (VSG334Q) /CSM/VS/VSG3-B/VSG334Q.Seq.d/                        743   0.0
FC-IC0077 (FC-IC0077Q) /CSM/FC-IC/FC-IC0077Q.Seq.d/                   658   0.0
VSE765 (VSE765Q) /CSM/VS/VSE7-C/VSE765Q.Seq.d/                         42   0.008
VSE760 (VSE760Q) /CSM/VS/VSE7-C/VSE760Q.Seq.d/                         42   0.008
SSE728 (SSE728Q) /CSM/SS/SSE7-B/SSE728Q.Seq.d/                         42   0.008
own update 2001.11.12
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

AF095934|AF095934.1 Dictyostelium discoideum p16-Arc (arpH) mRNA, complete cds.   999   0.0    1
AP002081|AP002081.2 Homo sapiens genomic DNA, chromosome 4q22-q24, clone:2080J19, WORKING DRAFT SEQUENCE, unordered pieces.    32   8e-05  7
AE014839|AE014839.1 Plasmodium falciparum 3D7 chromosome 11 section 4 of 8 of the complete sequence.    40   5e-04  10
AL035476|AL035476.7 Plasmodium falciparum MAL4P3.                  44   0.001  10
AC116920|AC116920.2 Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence.    32   0.003  11
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    38   0.003  13
AL929356|AL929356.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 2/5.    36   0.004  8
AL049184|AL049184.5 Plasmodium falciparum DNA *** SEQUENCING IN PROGRESS *** from  MAL13P3.    34   0.005  13
AE001429|AE001429.1 Plasmodium falciparum chromosome 2, section 66 of 73 of the complete sequence.    34   0.006  4
AC099711|AC099711.2 Mus musculus clone RP23-397C11, WORKING DRAFT SEQUENCE, 4 unordered pieces.    52   0.008  1
dna update 2004. 1. 9
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(O96626) RecName: Full=Actin-related protein 2/3 complex subunit...   276   2e-73
DQ985458_1(DQ985458|pid:none) Suberites domuncula actin related ...   105   6e-22
AK150443_1(AK150443|pid:none) Mus musculus bone marrow macrophag...    99   7e-20
AJ719279_1(AJ719279|pid:none) Gallus gallus mRNA for hypothetica...    97   2e-19
BC162200_1(BC162200|pid:none) Danio rerio si:dkeyp-15f12.2, mRNA...    97   3e-19
AX239567_1(AX239567|pid:none) Sequence 10 from Patent WO0164874.       96   6e-19
AK008097_1(AK008097|pid:none) Mus musculus adult male small inte...    96   6e-19
AK166919_1(AK166919|pid:none) Mus musculus blastocyst blastocyst...    95   1e-18
BC044413_1(BC044413|pid:none) Danio rerio actin related protein ...    95   1e-18
BC135815_1(BC135815|pid:none) Xenopus tropicalis actin related p...    93   4e-18
protein update 2009. 7. 7
PSORT 

 psg: 0.75  gvh: 0.50  alm: 0.50  top: 0.53  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: cytoplasmic
	 32.0 %: nuclear
	 24.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: endoplasmic reticulum

>> prediction for SSH791 is cyt
5' end seq. ID SSH791F
5' end seq. 
>SSH791F.Seq
ATCATATATATATAAAATAATATTACATTAAAATGAATTACGAAGACGACAACGTTGAAT
CAGGACAAGCTGGTAAATCAGATGCTGAATACAAAGCAGATATTGCCAATAGAGAAAAAG
AAGTAACCAAAGCATTAAATGCTGGTAAACCACAAGATGCTTTAAATGTAGCCTTAGCTG
ATCCACCAATTTACACTAAAACAGGTGCAATCAAGGATCAAAATGCAACCATTGTCCTCA
ATCTTTTAGGTAGTTTTAAAGATAAAGATGTTGAAACATCAGTCGAAACACTCAACGATG
ACCAACTCGATATTTTAATGAAATATGTCTACCGTGGTCTTGCTACCGGTGAAAATTCAC
CAATCTTTTT----------
Length of 5' end seq. 370
3' end seq. ID SSH791Z
3' end seq. 
>SSH791Z.Seq
----------AAACAGGTGCAATCAAGGATCAAAATGCAACCATTGTCCTCAATCTTTTA
GGTAGTTTTAAAGATAAAGATGTTGAAACATCAGTCGAAACACTCAACGATGACCAACTC
GATATTTTAATGAAATATGTCTACCGTGGTCTTGCTACCGGTGAAAATTCACCAATCTTT
TTCAAATGGCACGAATGTGTCCTCAAGAAGGGTGGTGCTGGTACAATCATTAGAGTTATC
TCTGAAAAGAAAACTGTTTAAGCAATTATCAATCCGAATCTGTAACCATTAAAAAATAGA
TTTCTATTTATTAAAA
Length of 3' end seq. 306
Connected seq. ID SSH791P
Connected seq. 
>SSH791P.Seq
ATCATATATATATAAAATAATATTACATTAAAATGAATTACGAAGACGACAACGTTGAAT
CAGGACAAGCTGGTAAATCAGATGCTGAATACAAAGCAGATATTGCCAATAGAGAAAAAG
AAGTAACCAAAGCATTAAATGCTGGTAAACCACAAGATGCTTTAAATGTAGCCTTAGCTG
ATCCACCAATTTACACTAAAACAGGTGCAATCAAGGATCAAAATGCAACCATTGTCCTCA
ATCTTTTAGGTAGTTTTAAAGATAAAGATGTTGAAACATCAGTCGAAACACTCAACGATG
ACCAACTCGATATTTTAATGAAATATGTCTACCGTGGTCTTGCTACCGGTGAAAATTCAC
CAATCTTTTT----------AAACAGGTGCAATCAAGGATCAAAATGCAACCATTGTCCT
CAATCTTTTAGGTAGTTTTAAAGATAAAGATGTTGAAACATCAGTCGAAACACTCAACGA
TGACCAACTCGATATTTTAATGAAATATGTCTACCGTGGTCTTGCTACCGGTGAAAATTC
ACCAATCTTTTTCAAATGGCACGAATGTGTCCTCAAGAAGGGTGGTGCTGGTACAATCAT
TAGAGTTATCTCTGAAAAGAAAACTGTTTAAGCAATTATCAATCCGAATCTGTAACCATT
AAAAAATAGATTTCTATTTATTAAAA
Length of connected seq. 676
Full length Seq ID SSH791E
Full length Seq. 
>SSH791E.Seq
ATCATATATATATAAAATAATATTACATTAAAATGAATTACGAAGACGACAACGTTGAAT
CAGGACAAGCTGGTAAATCAGATGCTGAATACAAAGCAGATATTGCCAATAGAGAAAAAG
AAGTAACCAAAGCATTAAATGCTGGTAAACCACAAGATGCTTTAAATGTAGCCTTAGCTG
ATCCACCAATTTACACTAAAACAGGTGCAATCAAGGATCAAAATGCAACCATTGTCCTCA
ATCTTTTAGGTAGTTTTAAAGATAAAGATGTTGAAACATCAGTCGAAACACTCAACGATG
ACCAACTCGATATTTTAATGAAATATGTCTACCGTGGTCTTGCTACCGGTGAAAATTCAC
CAATCTTTTTCAAATGGCACGAATGTGTCCTCAAGAAGGGTGGTGCTGGTACAATCATTA
GAGTTATCTCTGAAAAGAAAACTGTTTAAGCAATTATCAATCCGAATCTGTAACCATTAA
AAAATAGATTTCTATTTATTAAAA
Length of full length seq. 504