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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSH783
Library SS
(Link to library)
Clone ID SSH783
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16441-1
Original site URL
Representative seq. ID SSH783Z
(Link to Original site)
Representative DNA sequence 
>SSH783 (SSH783Q) /CSM/SS/SSH7-D/SSH783Q.Seq.d/
XXXXXXXXXXTGCCACACAATGTGTAGGTGGTGTTAATGCAACTTATTCACCAGAGATTG
TCATGTGTCCATCAAAAAATTCTTCAAGTGGTGGCAAAGGTTGGATCGCTGGTGTTGTTA
TTGCTATTCTTGCTTTAGCTGGTCTTGGTGGTTTTGGTTTCTACGTTTTTAAGAATCCAG
ATTTCAAACAAAAATTATTAAAAATGGTTGGTTTTTCAAAGGTCGGTCCAAAATATAGTG
TTATCGGTATTAAACCAAACTCATTAGCTGATGATGAATTTGGTATTGAAGATGATGATG
CTCAAATTTTAAATGATAATGATTTACAAGATAACGAAGATTTTTAAAAAAAAATAAAAA
CAAAAAAAAAA
sequence update 1998. 3.12
Translated Amino Acid sequence 
---ATQCVGGVNATYSPEIVMCPSKNSSSGGKGWIAGVVIAILALAGLGGFGFYVFKNPD
FKQKLLKMVGFSKVGPKYSVIGIKPNSLADDEFGIEDDDAQILNDNDLQDNEDF*kkikt
kkk
Translated Amino Acid sequence (All Frames) 
Frame A:
---ATQCVGGVNATYSPEIVMCPSKNSSSGGKGWIAGVVIAILALAGLGGFGFYVFKNPD
FKQKLLKMVGFSKVGPKYSVIGIKPNSLADDEFGIEDDDAQILNDNDLQDNEDF*kkikt
kkk


Frame B:
---phnv*vvlmqlihqrlscvhqkilqvvakvgslvllllfll*lvlvvlvstflriqi
snkny*kwlvfqrsvqnivlsvlnqth*lmmnlvlkmmmlkf*mimiykitkifkkk*kq
kk


Frame C:
---htmcrwc*cnlftrdchvsikkffkwwqrldrwccycyscfswswwfwflrf*esrf
qtkiikngwffkgrski*cyry*tklis***iwy*r**csnfk***ftr*rrflkknknk
kk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSA811 (VSA811Q) /CSM/VS/VSA8-A/VSA811Q.Seq.d/                        664   0.0
SSH783 (SSH783Q) /CSM/SS/SSH7-D/SSH783Q.Seq.d/                        664   0.0
SLB162 (SLB162Q) /CSM/SL/SLB1-C/SLB162Q.Seq.d/                        664   0.0
VSE481 (VSE481Q) /CSM/VS/VSE4-D/VSE481Q.Seq.d/                        656   0.0
SSH621 (SSH621Q) /CSM/SS/SSH6-A/SSH621Q.Seq.d/                        654   0.0
VHQ405 (VHQ405Q) /CSM/VH/VHQ4-A/VHQ405Q.Seq.d/                        642   0.0
VHE504 (VHE504Q) /CSM/VH/VHE5-A/VHE504Q.Seq.d/                        642   0.0
VHQ426 (VHQ426Q) /CSM/VH/VHQ4-B/VHQ426Q.Seq.d/                        636   0.0
VHO889 (VHO889Q) /CSM/VH/VHO8-D/VHO889Q.Seq.d/                        636   0.0
VHI195 (VHI195Q) /CSM/VH/VHI1-D/VHI195Q.Seq.d/                        636   0.0
own update 2009. 4. 4
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC110848|AC110848.5 Rattus norvegicus clone CH230-23F1, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    38  0.003  4
BD184779|BD184779.1 Nucleic acid molecule and polypeptide specific to intestinal hemorrhagic pathogenic Escherichia coli O157:H7, and method of use thereof.    46  0.30  1
AR204346|AR204346.1 Sequence 242 from patent US 6365723.          46  0.30  1
AE005660|AE005660.1 Escherichia coli O157:H7 EDL933 genome, contig 3 of 3, section 279 of 290.    46  0.30  1
AZ691832|AZ691832.1 ENTGJ19TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence.    42  0.72  2
BX324223|BX324223.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEY-148F24.    42  0.94  4
CC546811|CC546811.1 CH240_429P6.TARBAC13P2 CHORI-240 Bos taurus genomic clone CH240_429P6, genomic survey sequence.    44  1.2  1
AF338934|AF338934.1 Lycaeides sp. 'Warner Mts.' isolate E2 mitochondrial control region, partial sequence.    44  1.2  1
BI772838|BI772838.1 kp46c08.y1 TBN95TM-SSFH Strongyloides stercoralis cDNA 5' similar to SW:ATPB_CAEEL P46561 PROBABLE ATP SYNTHASE BETA CHAIN, MITOCHONDRIAL PRECURSOR ;, mRNA sequence.    34  1.4  2
BX530073|BX530073.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-201D22.    42  1.6  5
dna update 2003. 8. 8
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP001322_5108(CP001322|pid:none) Desulfatibacillum alkenivorans ...    32   6.7
protein update 2009. 1.31
PSORT 

 psg: 0.84  gvh: 0.67  alm: 0.22  top: 0.67  tms: 0.07  mit: 0.05  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.06  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 40.0 %: nuclear
	 28.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: Golgi
	  8.0 %: endoplasmic reticulum
	  4.0 %: vesicles of secretory system

>> prediction for SSH783 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSH783Z
3' end seq. 
>SSH783Z.Seq
----------TGCCACACAATGTGTAGGTGGTGTTAATGCAACTTATTCACCAGAGATTG
TCATGTGTCCATCAAAAAATTCTTCAAGTGGTGGCAAAGGTTGGATCGCTGGTGTTGTTA
TTGCTATTCTTGCTTTAGCTGGTCTTGGTGGTTTTGGTTTCTACGTTTTTAAGAATCCAG
ATTTCAAACAAAAATTATTAAAAATGGTTGGTTTTTCAAAGGTCGGTCCAAAATATAGTG
TTATCGGTATTAAACCAAACTCATTAGCTGATGATGAATTTGGTATTGAAGATGATGATG
CTCAAATTTTAAATGATAATGATTTACAAGATAACGAAGATTTTTAAAAAAAAATAAAAA
CAAAAAAAAAA
Length of 3' end seq. 361
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -