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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSH782
Library SS
(Link to library)
Clone ID SSH782
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15495-1
Original site URL
Representative seq. ID SSH782Z
(Link to Original site)
Representative DNA sequence 
>SSH782 (SSH782Q) /CSM/SS/SSH7-D/SSH782Q.Seq.d/
XXXXXXXXXXAAAGTATCTATGGTAAAAAGGGAGCAACTGGTTGTGTTCTTGTTAGAACA
GGCCAAGCAATCATTGTTGGCATTTATGATGATAAAGTCCAACCAGGATCAGCTGCACTT
ATTGTTGAAAAGTTAGGTGATTACTTAAGAGATAATGGTTATTAAGATATTAATATCTTG
TTAAAACCAATTAGATTTAATTTTAAGAATTAAAAAAAATAATAATAATAATAAAATTTA
AATGTCACTACTAAAATAAATAAATAAAAAAAAAAAACTTAAATAGTAAACCCCTAGAAA
TCAATTAAAAAAAA
sequence update 1998. 3.12
Translated Amino Acid sequence 
---SIYGKKGATGCVLVRTGQAIIVGIYDDKVQPGSAALIVEKLGDYLRDNGY*dinill
kpirfnfkn*kk*****nlnvttkink*kkkt*ivnp*ksikk
Translated Amino Acid sequence (All Frames) 
Frame A:
---kylw*kgsnwlcsc*nrpsnhcwhl***sptrisctyc*kvr*llkr*wllry*ylv
ktn*i*f*elkkiiiiikfkchy*nk*ikkknlnskplein*kk


Frame B:
---SIYGKKGATGCVLVRTGQAIIVGIYDDKVQPGSAALIVEKLGDYLRDNGY*dinill
kpirfnfkn*kk*****nlnvttkink*kkkt*ivnp*ksikk


Frame C:
---vsmvkreqlvvflleqakqsllafmmiksnqdqlhlllks*vit*eimvikilisc*
nqldlilrikknnnnnki*msllk*inkkkklk**tprnqlkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM730 (SSM730Q) /CSM/SS/SSM7-B/SSM730Q.Seq.d/                        468   e-131
SSM510 (SSM510Q) /CSM/SS/SSM5-A/SSM510Q.Seq.d/                        468   e-131
SSK539 (SSK539Q) /CSM/SS/SSK5-B/SSK539Q.Seq.d/                        468   e-131
SSJ448 (SSJ448Q) /CSM/SS/SSJ4-B/SSJ448Q.Seq.d/                        468   e-131
SSI218 (SSI218Q) /CSM/SS/SSI2-A/SSI218Q.Seq.d/                        468   e-131
SSH782 (SSH782Q) /CSM/SS/SSH7-D/SSH782Q.Seq.d/                        468   e-131
SSH318 (SSH318Q) /CSM/SS/SSH3-A/SSH318Q.Seq.d/                        468   e-131
SSF468 (SSF468Q) /CSM/SS/SSF4-C/SSF468Q.Seq.d/                        468   e-131
SSA309 (SSA309Q) /CSM/SS/SSA3-A/SSA309Q.Seq.d/                        468   e-131
SSH425 (SSH425Q) /CSM/SS/SSH4-B/SSH425Q.Seq.d/                        460   e-129
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

X61581|X61581.1 D.discoideum mRNA for profilin I.                398  e-127  2
BX321921|BX321921.4 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEYP-114B5.    44  0.007  6
AC115684|AC115684.2 Dictyostelium discoideum chromosome 2 map 3108975-3191114 strain AX4, complete sequence.    46  0.013  2
AC020554|AC020554.4 Homo sapiens chromosome X clone RP11-476P22, WORKING DRAFT SEQUENCE, 17 unordered pieces.    42  0.014  6
AC145865|AC145865.1 Pan troglodytes chromosome UNK clone RP43-20N5, *** SEQUENCING IN PROGRESS ***, 17 unordered pieces.    40  0.038  4
BZ972057|BZ972057.1 PUGIS69TB ZM_0.6_1.0_KB Zea mays genomic clone ZMMBTa393L17, DNA sequence.    36  0.039  2
AC146156|AC146156.1 Pan troglodytes chromosome UNK clone RP43-1P23, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    40  0.039  3
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    48  0.063  3
AC069379|AC069379.1 Homo sapiens chromosome 4 clone RP11-774A11 map 4, LOW-PASS SEQUENCE SAMPLING.    48  0.063  1
AJ542837|AJ542837.1 Equus caballus GSS, BAC clone CH241-100E10, SP6 end sequence.    48  0.063  1
dna update 2003. 8. 8
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S13199(S13199)profilin - slime mold (Physarum polycephalum)            74   1e-12
C48405(C48405)profilin-IB - Acanthamoeba sp. (tentative sequence)      70   3e-11
(Q95VF7) RecName: Full=Profilin-1B; AltName: Full=Profilin IB; A...    69   4e-11
NRL(1ACF) Profilin i - Acanthamoeba castellanii                        69   7e-11
NRL(2PRF) Profilin ia (nmr, 19 structures) - Acanthamoeba sp.          67   2e-10
(P68696) RecName: Full=Profilin-1A; AltName: Full=Profilin IA; A...    67   2e-10
FJ899746_1(FJ899746|pid:none) Amaranthus retroflexus Ama r 2 pol...    63   4e-09
(Q9XG85) RecName: Full=Profilin-1; AltName: Full=Pollen allergen...    62   6e-09
(P26200) RecName: Full=Profilin-2; AltName: Full=Profilin II;  &...    62   6e-09
(Q64LH0) RecName: Full=Profilin-3; AltName: Full=Pollen allergen...    62   8e-09
protein update 2009. 6.13
PSORT 

 psg: 0.91  gvh: 0.53  alm: 0.37  top: 0.33  tms: 0.00  mit: 0.27  mip: 0.04
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: nuclear
	 32.0 %: cytoplasmic
	 12.0 %: extracellular, including cell wall
	  8.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for SSH782 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSH782Z
3' end seq. 
>SSH782Z.Seq
----------AAAGTATCTATGGTAAAAAGGGAGCAACTGGTTGTGTTCTTGTTAGAACA
GGCCAAGCAATCATTGTTGGCATTTATGATGATAAAGTCCAACCAGGATCAGCTGCACTT
ATTGTTGAAAAGTTAGGTGATTACTTAAGAGATAATGGTTATTAAGATATTAATATCTTG
TTAAAACCAATTAGATTTAATTTTAAGAATTAAAAAAAATAATAATAATAATAAAATTTA
AATGTCACTACTAAAATAAATAAATAAAAAAAAAAAACTTAAATAGTAAACCCCTAGAAA
TCAATTAAAAAAAA
Length of 3' end seq. 304
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -