>SSH770 (SSH770Q) /CSM/SS/SSH7-C/SSH770Q.Seq.d/
GTTTTTCAAGTTATGATACAAAACCAATTGAATGTGTTAAAATTAGATTTAAAGATTTAG
AAAAACATTATCTAAATTGTCCTTTTAGACCAATAGAATGTAGCTTTTGTAAATCTGAAT
TTACTTTTTATTCAATTAAAGACCATGAAACTAATTGTGATTTCAAATTAGTAGAATGTA
ATCAATGTAAATCTCAAATATCAAAAAAAGAATTAAAGTATCATTTAGATGAAAATTGTC
CAAATCAAATCATATXXXXXXXXXXCATTCTTTATTGGTATTTTTACAGATGGAGATAAT
AATGAAAGTAAAGGTTATATTAGTATATATTTATTTTTAGATACAAGTGATATTCCAAAA
GGAAGATCTATAAACACCGAGTTTTCTTTAAAATTTAATAATCAAAGAGATTCAGCACAA
TCTTTAAATCGTGAATATAAAGCAACTTTTCCAATTCGTGATGGTTCTGGTTGGGGAGAT
AGACGTTCAATTAAAACCCATAATTTAGAATCAAATGGTTACATTAAAGATAATACTCTC
TTAATTACAGCAGAGGTCACAATAAAGAAAATACTTTGGTTGGTTGAAGAGTCTCAATGT
GATAAACATTAAAAAAAAAAATAAAACTCATATGATGTAAAAT

FSSYDTKPIECVKIRFKDLEKHYLNCPFRPIECSFCKSEFTFYSIKDHETNCDFKLVECN
QCKSQISKKELKYHLDENCPNQII---

---FFIGIFTDGDNNESKGYISIYLFLDTSDIPKGRSINTEFSLKFNNQRDSAQSLNREY
KATFPIRDGSGWGDRRSIKTHNLESNGYIKDNTLLITAEVTIKKILWLVEESQCDKH*kk
k*nsydvk

Frame A:
vfqvmiqnqlnvlkldlki*knii*ivlldq*nvafvnlnllfiqlktmklivisn**nv
invnlkyqkkn*sii*mkivqiksy---

---hsllvflqmeiimkvkvilvyiyf*iqvifqkedl*tpsfl*nliikeiqhnl*ivn
ikqlfqfvmvlvgeidvqlkpii*nqmvtlkiils*lqqrsq*rkyfgwlkslnvinikk
knkthmm*n

Frame B:
ffkl*yktn*mc*n*i*rfrktlsklsf*tnrm*ll*i*iyflfn*rp*n*l*fqisrm*
sm*isnikkrikvsfr*klsksnh---

---ilywyfyrwr***k*rly*yififryk*yskrkiykhrvffki**skrfstifks*i
*snfsns*wfwlgr*tfn*np*frikwlh*r*yslnysrghnkentlvg*rvsm**tlkk
kikli*ck

Frame C:
FSSYDTKPIECVKIRFKDLEKHYLNCPFRPIECSFCKSEFTFYSIKDHETNCDFKLVECN
QCKSQISKKELKYHLDENCPNQII---

---FFIGIFTDGDNNESKGYISIYLFLDTSDIPKGRSINTEFSLKFNNQRDSAQSLNREY
KATFPIRDGSGWGDRRSIKTHNLESNGYIKDNTLLITAEVTIKKILWLVEESQCDKH*kk
k*nsydvk

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSH770 (SSH770Q) /CSM/SS/SSH7-C/SSH770Q.Seq.d/                       1108   0.0
VSJ617 (VSJ617Q) /CSM/VS/VSJ6-A/VSJ617Q.Seq.d/                         36   0.63
VHP862 (VHP862Q) /CSM/VH/VHP8-C/VHP862Q.Seq.d/                         36   0.63
VHG604 (VHG604Q) /CSM/VH/VHG6-A/VHG604Q.Seq.d/                         36   0.63
SSM110 (SSM110Q) /CSM/SS/SSM1-A/SSM110Q.Seq.d/                         36   0.63
SSL885 (SSL885Q) /CSM/SS/SSL8-D/SSL885Q.Seq.d/                         36   0.63
SSI847 (SSI847Q) /CSM/SS/SSI8-B/SSI847Q.Seq.d/                         36   0.63
SSI181 (SSI181Q) /CSM/SS/SSI1-D/SSI181Q.Seq.d/                         36   0.63
SSH207 (SSH207Q) /CSM/SS/SSH2-A/SSH207Q.Seq.d/                         36   0.63
SSG648 (SSG648Q) /CSM/SS/SSG6-B/SSG648Q.Seq.d/                         36   0.63

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC115577|AC115577.2 Dictyostelium discoideum chromosome 2 map 4657875-4914984 strain AX4, complete sequence.   400  0.0  5
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    36  0.079  10
AL512406|AL512406.14 Human DNA sequence from clone RP11-504J9 on chromosome 6.    40  0.081  3
CC387020|CC387020.1 PUHNB03TD ZM_0.6_1.0_KB Zea mays genomic clone ZMMBTa488B06, DNA sequence.    38  0.14  2
AL844507|AL844507.1 Plasmodium falciparum chromosome 8.           40  0.17  13
CC330390|CC330390.1 OGQAM74TH ZM_0.7_1.5_KB Zea mays genomic clone ZMMBMa0367M03, DNA sequence.    38  0.18  2
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence.    36  0.33  8
BF283433|BF283433.1 EST448024 Rat Gene Index, normalized rat, Rattus norvegicus cDNA Rattus norvegicus cDNA clone RGIEB95 3' sequence, mRNA sequence.    46  0.53  1
AI410132|AI410132.1 EST238425 Normalized rat kidney, Bento Soares Rattus sp. cDNA clone RKIEB65 3' end, mRNA sequence.    46  0.53  1
AX659033|AX659033.1 Sequence 4 from Patent WO02103041.            46  0.53  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116963_47(AC116963|pid:none) Dictyostelium discoideum chromoso...   235   7e-61
AY956816_1(AY956816|pid:none) Euprymna scolopes tumor necrosis f...    54   4e-06
AP008216_644(AP008216|pid:none) Oryza sativa (japonica cultivar-...    53   6e-06
BC075550_1(BC075550|pid:none) Xenopus tropicalis TRAF-type zinc ...    50   4e-05
CR942471_1(CR942471|pid:none) Xenopus tropicalis finished cDNA, ...    50   4e-05
BT036518_1(BT036518|pid:none) Zea mays full-length cDNA clone ZM...    50   4e-05
BT059017_1(BT059017|pid:none) Salmo salar clone ssal-rgf-520-217...    50   7e-05
AC016795_20(AC016795|pid:none) Arabidopsis thaliana chromosome I...    49   9e-05
AK226819_1(AK226819|pid:none) Arabidopsis thaliana mRNA for ubiq...    49   9e-05
(Q84WU2) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 13;...    49   9e-05

 psg: 0.75  gvh: 0.34  alm: 0.38  top: 0.53  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 32.0 %: nuclear
	 20.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for SSH770 is cyt

>SSH770F.Seq
GTTTTTCAAGTTATGATACAAAACCAATTGAATGTGTTAAAATTAGATTTAAAGATTTAG
AAAAACATTATCTAAATTGTCCTTTTAGACCAATAGAATGTAGCTTTTGTAAATCTGAAT
TTACTTTTTATTCAATTAAAGACCATGAAACTAATTGTGATTTCAAATTAGTAGAATGTA
ATCAATGTAAATCTCAAATATCAAAAAAAGAATTAAAGTATCATTTAGATGAAAATTGTC
CAAATCAAATCATAT----------

>SSH770Z.Seq
----------CATTCTTTATTGGTATTTTTACAGATGGAGATAATAATGAAAGTAAAGGT
TATATTAGTATATATTTATTTTTAGATACAAGTGATATTCCAAAAGGAAGATCTATAAAC
ACCGAGTTTTCTTTAAAATTTAATAATCAAAGAGATTCAGCACAATCTTTAAATCGTGAA
TATAAAGCAACTTTTCCAATTCGTGATGGTTCTGGTTGGGGAGATAGACGTTCAATTAAA
ACCCATAATTTAGAATCAAATGGTTACATTAAAGATAATACTCTCTTAATTACAGCAGAG
GTCACAATAAAGAAAATACTTTGGTTGGTTGAAGAGTCTCAATGTGATAAACATTAAAAA
AAAAAATAAAACTCATATGATGTAAAAT

>SSH770P.Seq
GTTTTTCAAGTTATGATACAAAACCAATTGAATGTGTTAAAATTAGATTTAAAGATTTAG
AAAAACATTATCTAAATTGTCCTTTTAGACCAATAGAATGTAGCTTTTGTAAATCTGAAT
TTACTTTTTATTCAATTAAAGACCATGAAACTAATTGTGATTTCAAATTAGTAGAATGTA
ATCAATGTAAATCTCAAATATCAAAAAAAGAATTAAAGTATCATTTAGATGAAAATTGTC
CAAATCAAATCATAT----------CATTCTTTATTGGTATTTTTACAGATGGAGATAAT
AATGAAAGTAAAGGTTATATTAGTATATATTTATTTTTAGATACAAGTGATATTCCAAAA
GGAAGATCTATAAACACCGAGTTTTCTTTAAAATTTAATAATCAAAGAGATTCAGCACAA
TCTTTAAATCGTGAATATAAAGCAACTTTTCCAATTCGTGATGGTTCTGGTTGGGGAGAT
AGACGTTCAATTAAAACCCATAATTTAGAATCAAATGGTTACATTAAAGATAATACTCTC
TTAATTACAGCAGAGGTCACAATAAAGAAAATACTTTGGTTGGTTGAAGAGTCTCAATGT
GATAAACATTAAAAAAAAAAATAAAACTCATATGATGTAAAAT