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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSH751
Library SS
(Link to library)
Clone ID SSH751
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U01248-1
Original site URL
Representative seq. ID SSH751Z
(Link to Original site)
Representative DNA sequence 
>SSH751 (SSH751Q) /CSM/SS/SSH7-C/SSH751Q.Seq.d/
XXXXXXXXXXAACTTTAGTCGCAAGAGCTCATCAACTTGTTATGGAGGGTTACAATTGGT
GTCATGATCAAAATGTTGTCACCATTTTCTCCGCTCCAAACTATTGTTATAGATGTGGTA
ATCTTGCTGCTATTATGGAAATTGATGAAAAAATGAAACATACTTTCCTTCAATTTGATC
CAGCTCCAAGAAGAGGTGAACCACATGTAACTCGTCGTACTCCAGACTACTTCTTGTAAA
GATCTTTCAATAATAATAATAACAATAATAATAATAATAAAAAAAAACCATTTTCCATTT
TTTCCATTCAACTATTACAAAAAAAAAAAAAAA
sequence update 1998. 3.12
Translated Amino Acid sequence 
---TLVARAHQLVMEGYNWCHDQNVVTIFSAPNYCYRCGNLAAIMEIDEKMKHTFLQFDP
APRRGEPHVTRRTPDYFL*rsfnnnnnnnnnnkkkpfsifsiqllqkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
---TLVARAHQLVMEGYNWCHDQNVVTIFSAPNYCYRCGNLAAIMEIDEKMKHTFLQFDP
APRRGEPHVTRRTPDYFL*rsfnnnnnnnnnnkkkpfsifsiqllqkkkk


Frame B:
---l*sqelinllwrvtigvmikmlspfsplqtividvvillllwklmkk*nilsfnliq
lqeevnhm*lvvlqttsckdlsiiiitiiiiikknhfpffpfnyykkkkk


Frame C:
---fsrkssstcygglqlvs*skcchhflrsklll*mw*sccyygn**knetyfpsi*ss
skkr*ttcnssysrlllvkifq****q*****kktifhffhstitkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM188 (SSM188Q) /CSM/SS/SSM1-D/SSM188Q.Seq.d/                        472   e-132
SSH751 (SSH751Q) /CSM/SS/SSH7-C/SSH751Q.Seq.d/                        472   e-132
SSG483 (SSG483Q) /CSM/SS/SSG4-D/SSG483Q.Seq.d/                        472   e-132
SSF487 (SSF487Q) /CSM/SS/SSF4-D/SSF487Q.Seq.d/                        472   e-132
SSD367 (SSD367Q) /CSM/SS/SSD3-C/SSD367Q.Seq.d/                        472   e-132
SSB711 (SSB711Q) /CSM/SS/SSB7-A/SSB711Q.Seq.d/                        472   e-132
SLE124 (SLE124Q) /CSM/SL/SLE1-A/SLE124Q.Seq.d/                        472   e-132
SSL791 (SSL791Q) /CSM/SS/SSL7-D/SSL791Q.Seq.d/                        466   e-130
SSK573 (SSK573Q) /CSM/SS/SSK5-D/SSK573Q.Seq.d/                        458   e-128
SSG422 (SSG422Q) /CSM/SS/SSG4-A/SSG422Q.Seq.d/                        450   e-126
own update 2000. 8.29
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AF138278|AF138278.1 Dictyostelium discoideum protein phosphatase 2A catalytic subunit mRNA, complete cds.   454  e-124  1
CD565827|CD565827.1 tab86e11.x1 Hydra EST -III Hydra magnipapillata cDNA 3' similar to SW:P2AA_CHICK P48463 SERINE/THREONINE PROTEIN PHOSPHATASE PP2A-ALPHA, CATALYTIC SUBUNIT ;, mRNA sequence.    66  9e-21  3
CD267083|CD267083.1 tab04d03.x1 Hydra EST -III Hydra magnipapillata cDNA 3' similar to SW:P2AA_CHICK P48463 SERINE/THREONINE PROTEIN PHOSPHATASE PP2A-ALPHA, CATALYTIC SUBUNIT ;, mRNA sequence.    66  1e-19  3
CB072856|CB072856.1 taa32e05.x1 Hydra EST -II Hydra magnipapillata cDNA 3' similar to SW:P2AA_CHICK P48463 SERINE/THREONINE PROTEIN PHOSPHATASE PP2A-ALPHA, CATALYTIC SUBUNIT ;, mRNA sequence.    64  4e-17  3
M16968|M16968.1 Bovine protein phosphatase type 2A catalytic subunit mRNA, complete cds.    66  6e-17  2
X72858|X72858.1 B.taurus mRNA for protein phosphatase type 2A alpha catalytic  subunit.    66  6e-17  2
X52554|X52554.1 Bovine mRNA for protein phosphatase 2A alpha catalytic subunit.    66  7e-17  2
BW194892|BW194892.1 Ciona intestinalis cDNA, clone:cicl033i04, 5' end, single read.    82  8e-17  2
BW114023|BW114023.1 Ciona intestinalis cDNA, clone:rcitb066f20, 3' end, single read.    80  2e-16  2
BW245006|BW245006.1 Ciona intestinalis cDNA, clone:citb066f20, 5' end, single read.    80  2e-16  2
dna update 2003. 8. 8
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF138278_1(AF138278|pid:none) Dictyostelium discoideum protein p...   165   4e-40
BC044495_1(BC044495|pid:none) Danio rerio protein phosphatase 2 ...   151   8e-36
BT044851_1(BT044851|pid:none) Salmo salar clone ssal-rgf-505-273...   151   8e-36
AJ719537_1(AJ719537|pid:none) Gallus gallus mRNA for hypothetica...   151   8e-36
AY888259_1(AY888259|pid:none) Synthetic construct Homo sapiens c...   151   8e-36
(P62714) RecName: Full=Serine/threonine-protein phosphatase 2A c...   151   8e-36
BC072775_1(BC072775|pid:none) Xenopus laevis protein phosphatase...   151   8e-36
(P48463) RecName: Full=Serine/threonine-protein phosphatase 2A c...   151   8e-36
AK090311_1(AK090311|pid:none) Mus musculus 0 day neonate cortex ...   151   8e-36
J03805_1(J03805|pid:none) Human phosphatase 2A mRNA, partial cds.     151   8e-36
protein update 2009. 6.13
PSORT 

 psg: 0.71  gvh: 0.27  alm: 0.52  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.02
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 36.0 %: cytoplasmic
	 12.0 %: cytoskeletal
	  4.0 %: mitochondrial

>> prediction for SSH751 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSH751Z
3' end seq. 
>SSH751Z.Seq
----------AACTTTAGTCGCAAGAGCTCATCAACTTGTTATGGAGGGTTACAATTGGT
GTCATGATCAAAATGTTGTCACCATTTTCTCCGCTCCAAACTATTGTTATAGATGTGGTA
ATCTTGCTGCTATTATGGAAATTGATGAAAAAATGAAACATACTTTCCTTCAATTTGATC
CAGCTCCAAGAAGAGGTGAACCACATGTAACTCGTCGTACTCCAGACTACTTCTTGTAAA
GATCTTTCAATAATAATAATAACAATAATAATAATAATAAAAAAAAACCATTTTCCATTT
TTTCCATTCAACTATTACAAAAAAAAAAAAAAA
Length of 3' end seq. 323
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -