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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSH745
Library SS
(Link to library)
Clone ID SSH745
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11996-1|Contig-U13419-1
Original site URL
Representative seq. ID SSH745P
(Link to Original site)
Representative DNA sequence 
>SSH745 (SSH745Q) /CSM/SS/SSH7-B/SSH745Q.Seq.d/
AAAAAAATAATATTTAAATAGTTAGTATATAAAAATAAAAATAAAAATAAAAATAAAAAA
AAAAATAAAAAAATAAAAATAATTTTTACCAATTGCAAAAAAAAAAAAAAAAAAAAAAAT
TTTCGATTGATCAAATCAAAACATTTTGACTAACACAAAAAAGCAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAXXXXXXXXXXTGATTATGATTTCCCAGAACCAGAATGGACTCATGTC
TCTGAACATGCCAAAGCTTTCATTAGAAACTTAATTGTCAAAGATCCAGATCAACGTCAT
ACTGCCAAACAATGTCTTGATGACCTTTGGCTCTCTGGTAGTGATCAATCAATTGGTTCT
GCTGCTGATCTCCACTCTCATTTCGCTGAAAAGATGAAGAAATATAATGACCAAAGAAGA
GGTGGTCAATCTTCAAATAATTAAATTTAATAATAATAATAATA
sequence update 1999. 1.17
Translated Amino Acid sequence 
kk*ylns*yikikikikikkkikk*k*flpiakkkkkkkifd*SNQNILTNTKKQKKKKK
KKKK---

---DYDFPEPEWTHVSEHAKAFIRNLIVKDPDQRHTAKQCLDDLWLSGSDQSIGSAADLH
SHFAEKMKKYNDQRRGGQSSNN*i*****
Translated Amino Acid sequence (All Frames) 
Frame A:
kkiifk*lvyknknknknkkknkkikiiftnckkkkkkknfrlikskhfd*hkkakkkkk
kkkk---

---*l*fprtrmdscl*tcqsfh*klncqrsrstsycqtms**plalw**sinwfcc*sp
lsfr*kdeei**pkkrwsifk*lnliiiii

Frame B:
kk*ylns*yikikikikikkkikk*k*flpiakkkkkkkifd*SNQNILTNTKKQKKKKK
KKKK---

---DYDFPEPEWTHVSEHAKAFIRNLIVKDPDQRHTAKQCLDDLWLSGSDQSIGSAADLH
SHFAEKMKKYNDQRRGGQSSNN*i*****

Frame C:
knni*ivsi*k*k*k*k*kkk*knknnfyqlqkkkkkkkfsidqiktf*ltqkskkkkkk
kkk---

---imisqnqnglmslnmpklslet*lskiqinvilpnnvlmtfgslvvinqlvlllist
lislkr*rnimtkeevvnlqiikfnnnnn
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSK695 (SSK695Q) /CSM/SS/SSK6-D/SSK695Q.Seq.d/                        460   e-129
SSJ513 (SSJ513Q) /CSM/SS/SSJ5-A/SSJ513Q.Seq.d/                        460   e-129
SSJ377 (SSJ377Q) /CSM/SS/SSJ3-D/SSJ377Q.Seq.d/                        460   e-129
SSI101 (SSI101Q) /CSM/SS/SSI1-A/SSI101Q.Seq.d/                        460   e-129
SSH745 (SSH745Q) /CSM/SS/SSH7-B/SSH745Q.Seq.d/                        460   e-129
SSH378 (SSH378Q) /CSM/SS/SSH3-D/SSH378Q.Seq.d/                        460   e-129
SLI715 (SLI715Q) /CSM/SL/SLI7-A/SLI715Q.Seq.d/                        460   e-129
SLF532 (SLF532Q) /CSM/SL/SLF5-B/SLF532Q.Seq.d/                        460   e-129
SLD285 (SLD285Q) /CSM/SL/SLD2-D/SLD285Q.Seq.d/                        460   e-129
SLC252 (SLC252Q) /CSM/SL/SLC2-C/SLC252Q.Seq.d/                        460   e-129
own update 2000.12.16
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.   460  e-138  3
AC121550|AC121550.2 Mus musculus clone RP24-144E8, WORKING DRAFT SEQUENCE, 39 unordered pieces.    42  5.9  1
AC122487|AC122487.2 Mus musculus chromosome UNK clone RP24-381E21, WORKING DRAFT SEQUENCE, 6 unordered pieces.    42  5.9  1
BH348136|BH348136.1 CH230-131M8.TV CHORI-230 Segment 1 Rattus norvegicus genomic clone CH230-131M8, DNA sequence.    42  5.9  1
AQ181341|AQ181341.1 HS_3216_A2_B03_MR CIT Approved Human Genomic Sperm Library D Homo sapiens genomic clone Plate=3216 Col=6 Row=C, DNA sequence.    42  5.9  1
AC101879|AC101879.8 Mus musculus, clone RP23-378H21, complete sequence.    42    116  2
AL161791|AL161791.15 Human DNA sequence from clone RP11-82L2 on chromosome 9.    42    246  3
dna update 2003. 8. 8
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q869W6) RecName: Full=Probable calcium/calmodulin-dependent ser...   171   9e-42
AB076903_1(AB076903|pid:none) Ciona intestinalis Ci-CaM-K mRNA f...    62   6e-09
AE014135_81(AE014135|pid:none) Drosophila melanogaster chromosom...    57   3e-07
AE014135_86(AE014135|pid:none) Drosophila melanogaster chromosom...    57   3e-07
(Q63450) RecName: Full=Calcium/calmodulin-dependent protein kina...    55   1e-06
(Q14012) RecName: Full=Calcium/calmodulin-dependent protein kina...    55   1e-06
AC116982_54(AC116982|pid:none) Dictyostelium discoideum chromoso...    55   1e-06
PDBF(1A06) MOL_ID: 1; MOLECULE: CALCIUM/CALMODULIN-DEPENDENT PRO...    55   1e-06
AY890885_1(AY890885|pid:none) Synthetic construct Homo sapiens c...    55   1e-06
L24907_1(L24907|pid:none) Rattus norvegicus calcium/calmodulin-d...    55   1e-06
protein update 2009. 6.13
PSORT 

 psg: 0.07  gvh: 0.09  alm: 0.57  top: 0.53  tms: 0.00  mit: 0.32  mip: 0.00
 nuc: 0.36  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 68.0 %: nuclear
	 24.0 %: cytoplasmic
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane

>> prediction for SSH745 is nuc
5' end seq. ID SSH745F
5' end seq. 
>SSH745F.Seq
AAAAAAATAATATTTAAATAGTTAGTATATAAAAATAAAAATAAAAATAAAAATAAAAAA
AAAAATAAAAAAATAAAAATAATTTTTACCAATTGCAAAAAAAAAAAAAAAAAAAAAAAT
TTTCGATTGATCAAATCAAAACATTTTGACTAACACAAAAAAGCAAAAAAAAAAAAAAAA
AAAAAAAAAAAAA----------
Length of 5' end seq. 193
3' end seq. ID SSH745Z
3' end seq. 
>SSH745Z.Seq
----------TGATTATGATTTCCCAGAACCAGAATGGACTCATGTCTCTGAACATGCCA
AAGCTTTCATTAGAAACTTAATTGTCAAAGATCCAGATCAACGTCATACTGCCAAACAAT
GTCTTGATGACCTTTGGCTCTCTGGTAGTGATCAATCAATTGGTTCTGCTGCTGATCTCC
ACTCTCATTTCGCTGAAAAGATGAAGAAATATAATGACCAAAGAAGAGGTGGTCAATCTT
CAAATAATTAAATTTAATAATAATAATAATA
Length of 3' end seq. 261
Connected seq. ID SSH745P
Connected seq. 
>SSH745P.Seq
AAAAAAATAATATTTAAATAGTTAGTATATAAAAATAAAAATAAAAATAAAAATAAAAAA
AAAAATAAAAAAATAAAAATAATTTTTACCAATTGCAAAAAAAAAAAAAAAAAAAAAAAT
TTTCGATTGATCAAATCAAAACATTTTGACTAACACAAAAAAGCAAAAAAAAAAAAAAAA
AAAAAAAAAAAAA----------TGATTATGATTTCCCAGAACCAGAATGGACTCATGTC
TCTGAACATGCCAAAGCTTTCATTAGAAACTTAATTGTCAAAGATCCAGATCAACGTCAT
ACTGCCAAACAATGTCTTGATGACCTTTGGCTCTCTGGTAGTGATCAATCAATTGGTTCT
GCTGCTGATCTCCACTCTCATTTCGCTGAAAAGATGAAGAAATATAATGACCAAAGAAGA
GGTGGTCAATCTTCAAATAATTAAATTTAATAATAATAATAATA
Length of connected seq. 454
Full length Seq ID -
Full length Seq. -
Length of full length seq. -