>SSH725 (SSH725Q) /CSM/SS/SSH7-B/SSH725Q.Seq.d/
XXXXXXXXXXGTCTGCNCCAAACTATTGTTATAGATGTGGTAATGTTGCTGCAATTTTAC
AACTCGNCGAAAATCTTAAAAAGAACTTTGCAATCTTTGAAGCTGCTCCTCAAGAATCAA
GNGGTGCNCCAGNTAAAAAACCTGCNCCTGAATACTTTTTTTAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAGAAAACAAATCAAAAATATATATATTTATATATAAA
ATATAAAAGAAATAATACA

---LXQTIVIDVVMLLQFYNSXKILKRTLQSLKLLLKNQXVXQXKNLXLNTFFKKKKKKK
KKKKKKKENKSKIYIFIYKI*kk*y

Frame A:
---sapnycyrcgnvaailqlxenlkknfaifeaapqesxgapxkkpapeyff*kkkkkk
kkkkkkkrkqikniyiyi*nikeii


Frame B:
---LXQTIVIDVVMLLQFYNSXKILKRTLQSLKLLLKNQXVXQXKNLXLNTFFKKKKKKK
KKKKKKKENKSKIYIFIYKI*kk*y


Frame C:
---cxklll*mw*cccnfttrrks*kelcnl*scssrikxcxx*ktcx*ilflkkkkkkk
kkkkkkkktnqkyiylyikykrnnt

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSH725 (SSH725Q) /CSM/SS/SSH7-B/SSH725Q.Seq.d/                        266   1e-70
SSM503 (SSM503Q) /CSM/SS/SSM5-A/SSM503Q.Seq.d/                        262   2e-69
SSG470 (SSG470Q) /CSM/SS/SSG4-C/SSG470Q.Seq.d/                        262   2e-69
SSM349 (SSM349Q) /CSM/SS/SSM3-C/SSM349Q.Seq.d/                        246   1e-64
SSB632 (SSB632Q) /CSM/SS/SSB6-B/SSB632Q.Seq.d/                        159   2e-38
SSH521 (SSH521Q) /CSM/SS/SSH5-A/SSH521Q.Seq.d/                        147   9e-35
VSJ277 (VSJ277Q) /CSM/VS/VSJ2-D/VSJ277Q.Seq.d/                         66   3e-10
SSK166 (SSK166Q) /CSM/SS/SSK1-C/SSK166Q.Seq.d/                         66   3e-10
SSJ104 (SSJ104Q) /CSM/SS/SSJ1-A/SSJ104Q.Seq.d/                         66   3e-10
SSI621 (SSI621Q) /CSM/SS/SSI6-A/SSI621Q.Seq.d/                         66   3e-10

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC115607|AC115607.2 Dictyostelium discoideum chromosome 2 map 4559693-4624405 strain AX4, complete sequence.   262  2e-66  1
AF161253|AF161253.1 Dictyostelium discoideum protein phosphatase 4 catalytic subunit (pppC) mRNA, complete cds.   262  2e-66  1
BG132280|BG132280.1 EST465172 tomato crown gall Lycopersicon esculentum cDNA clone cTOE7E7 5' sequence, mRNA sequence.    62  8e-16  2
CF211085|CF211085.1 CAB20007_IIa_Fa_H10 Cabernet Sauvignon Flower bloom - CAB2 Vitis vinifera cDNA clone CAB20007_IIa_Fa_H10 5', mRNA sequence.    54  3e-12  2
CF211161|CF211161.1 CAB20007_IIa_Ra_H10 Cabernet Sauvignon Flower bloom - CAB2 Vitis vinifera cDNA clone CAB20007_IIa_Ra_H10 3', mRNA sequence.    54  3e-12  2
BF279195|BF279195.1 GA__Eb0037K05f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Eb0037K05f, mRNA sequence.    60  3e-08  2
AF176121|AF176121.1 Dictyostelium discoideum protein phosphatase 6 catalytic subunit (pppD) mRNA, complete cds.    66  2e-07  1
CD267710|CD267710.1 tab93c03.x1 Hydra EST -III Hydra magnipapillata cDNA 3' similar to SW:PPP4_HUMAN P33172 SERINE/THREONINE PROTEIN PHOSPHATASE 4 ;, mRNA sequence.    62  3e-06  1
AF138278|AF138278.1 Dictyostelium discoideum protein phosphatase 2A catalytic subunit mRNA, complete cds.    62  3e-06  1
CD567216|CD567216.1 tab45f06.x1 Hydra EST -III Hydra magnipapillata cDNA 3' similar to SW:PPP4_HUMAN P33172 SERINE/THREONINE PROTEIN PHOSPHATASE 4 ;, mRNA sequence.    62  3e-06  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P48528) RecName: Full=Serine/threonine-protein phosphatase PP-X...    85   9e-16
AB070573_1(AB070573|pid:none) Caenorhabditis elegans pph-4.1 mRN...    84   2e-15
(Q9XW79) RecName: Full=Serine/threonine-protein phosphatase 4 ca...    84   2e-15
BT078721_1(BT078721|pid:none) Lepeophtheirus salmonis clone lsal...    83   3e-15
(A0CCD2) RecName: Full=Serine/threonine-protein phosphatase PP-X...    83   3e-15
CP001328_646(CP001328|pid:none) Micromonas sp. RCC299 chromosome...    83   3e-15
(A8XE00) RecName: Full=Serine/threonine-protein phosphatase 4 ca...    83   3e-15
(P11084) RecName: Full=Serine/threonine-protein phosphatase 4 ca...    81   1e-14
(A6H772) RecName: Full=Serine/threonine-protein phosphatase 4 ca...    81   1e-14
S28173(S28173)phosphoprotein phosphatase (EC 3.1.3.16) X catalyt...    81   1e-14

 psg: 0.75  gvh: 0.46  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.31  mip: 0.00
 nuc: 0.63  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 84.0 %: nuclear
	  8.0 %: plasma membrane
	  4.0 %: mitochondrial
	  4.0 %: cytoskeletal

>> prediction for SSH725 is nuc

>SSH725Z.Seq
----------GTCTGCNCCAAACTATTGTTATAGATGTGGTAATGTTGCTGCAATTTTAC
AACTCGNCGAAAATCTTAAAAAGAACTTTGCAATCTTTGAAGCTGCTCCTCAAGAATCAA
GNGGTGCNCCAGNTAAAAAACCTGCNCCTGAATACTTTTTTTAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAGAAAACAAATCAAAAATATATATATTTATATATAAA
ATATAAAAGAAATAATACA