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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSH711
Library SS
(Link to library)
Clone ID SSH711
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig -
Original site URL
Representative seq. ID SSH711Z
(Link to Original site)
Representative DNA sequence 
>SSH711 (SSH711Q) /CSM/SS/SSH7-A/SSH711Q.Seq.d/
XXXXXXXXXXTCACGTTCAGCTCGTGCCGGTATCACTTTCCCAGTATCTCGTGTTGATAG
ATTATTACGTGAAGGTAGATTCGCTCCACGTGTTGAAAGTACCGCACCAGTCTATTTAGC
TGCCGTCCTTGAATATTTAGTATTTGAAATTTTAGAGTTAGCTCACAATACTTGTTCAAT
CAGTAAAAAGACCCGTATCACACCACAACACATCAACTGGGCCGTCGGTAATGATCTTGA
ATTAAATTCTCTCTTCCAACACGTTACCATCGCCTACGGTGGTGTTTTACCAACTCCACA
ACAATCCACCGGTGAAAAGAAGAAGAAACCATCAAAGAAAGCAGCTGAAGGTTCATCTCA
AATCTATTAAGGTGTTTTTTTAAAATTCTAAA
sequence update 1998. 3.12
Translated Amino Acid sequence 
---RSARAGITFPVSRVDRLLREGRFAPRVESTAPVYLAAVLEYLVFEILELAHNTCSIS
KKTRITPQHINWAVGNDLELNSLFQHVTIAYGGVLPTPQQSTGEKKKKPSKKAAEGSSQI
Y*gvflkf*
Translated Amino Acid sequence (All Frames) 
Frame A:
---hvqlvpvslsqylvlidyyvkvdslhvlkvphqsi*lpslni*ylkf*s*ltilvqs
vkrpvshhntstgpsvmiln*ilssntlpsptvvfyqlhnnppvkrrrnhqrkqlkvhlk
sikvff*nsk


Frame B:
---tfsscryhfpsisc**iit*r*irstc*kyrtslfscrp*ifsi*nfrvssqylfnq
*kdpyhttthqlgrr**s*ikfslptryhrlrwcftnsttihr*keeetikess*rfisn
llrcffkil


Frame C:
---RSARAGITFPVSRVDRLLREGRFAPRVESTAPVYLAAVLEYLVFEILELAHNTCSIS
KKTRITPQHINWAVGNDLELNSLFQHVTIAYGGVLPTPQQSTGEKKKKPSKKAAEGSSQI
Y*gvflkf*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSE420 (VSE420Q) /CSM/VS/VSE4-A/VSE420Q.Seq.d/                        722   0.0
VHK231 (VHK231Q) /CSM/VH/VHK2-B/VHK231Q.Seq.d/                        722   0.0
SSH711 (SSH711Q) /CSM/SS/SSH7-A/SSH711Q.Seq.d/                        722   0.0
SSF102 (SSF102Q) /CSM/SS/SSF1-A/SSF102Q.Seq.d/                        722   0.0
SSE821 (SSE821Q) /CSM/SS/SSE8-A/SSE821Q.Seq.d/                        722   0.0
SLE653 (SLE653Q) /CSM/SL/SLE6-C/SLE653Q.Seq.d/                        722   0.0
SLB145 (SLB145Q) /CSM/SL/SLB1-B/SLB145Q.Seq.d/                        722   0.0
SSH458 (SSH458Q) /CSM/SS/SSH4-C/SSH458Q.Seq.d/                        714   0.0
SLE105 (SLE105Q) /CSM/SL/SLE1-A/SLE105Q.Seq.d/                        714   0.0
FC-IC0886 (FC-IC0886Q) /CSM/FC-IC/FC-IC0886Q.Seq.d/                   708   0.0
own update 2002.12.13
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC121264|AC121264.3 Mus musculus clone RP24-233F22, WORKING DRAFT SEQUENCE, 7 unordered pieces.    48  0.080  1
T36540|T36540.1 EST101497 S. cerevisiae strain X2180-1A Saccharomyces cerevisiae cDNA 3' end, mRNA sequence.    34  1.4  2
AX601838|AX601838.1 Sequence 24 from Patent WO02092626.           34  1.5  2
AX594360|AX594360.1 Sequence 14 from Patent EP1258494.            34  1.5  2
V01304|V01304.1 Yeast (S. cerevisiae) gene for histone H2A1.      34  2.5  2
Z26494|Z26494.1 S.cerevisiae genes for histone H2A and H2B, trehalase, and hexaprenyl pyrophosphate synthetase.    38  4.8  3
AX345695|AX345695.1 Sequence 766 from Patent WO0200928.           42  5.0  1
BF245168|BF245168.1 601863817F1 NIH_MGC_57 Homo sapiens cDNA clone IMAGE:4082188 5', mRNA sequence.    42  5.0  1
AC111710|AC111710.4 Rattus norvegicus clone CH230-40N19, *** SEQUENCING IN PROGRESS ***, 2 unordered pieces.    42  5.0  1
AC097691|AC097691.6 Rattus norvegicus clone CH230-61C22, *** SEQUENCING IN PROGRESS ***, 1 ordered piece.    42  5.0  1
dna update 2003. 8. 8
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(A3LXE7) RecName: Full=Histone H2A.2;  &CP000500_276(CP000500|pi...   120   2e-26
(Q6BRG3) RecName: Full=Histone H2A.2;  &CR382136_721(CR382136|pi...   120   2e-26
(A5DBG4) RecName: Full=Histone H2A.1;                                 119   2e-26
(A5DWF1) RecName: Full=Histone H2A.1;                                 119   2e-26
(A3LZZ0) RecName: Full=Histone H2A.1;  &CP000502_101(CP000502|pi...   119   4e-26
(Q4HTT1) RecName: Full=Histone H2A;                                   119   4e-26
(P08844) RecName: Full=Histone H2A;  &A27332(A27332) &AM920435_8...   119   4e-26
(Q0U1A1) RecName: Full=Histone H2A;                                   119   4e-26
(A1CJ10) RecName: Full=Histone H2A;  &(A1D8G8) RecName: Fu &(Q2U...   119   4e-26
(O13413) RecName: Full=Histone H2A;  &AM270257_26(AM270257|pid:n...   119   4e-26
protein update 2009. 6.13
PSORT 

 psg: 0.90  gvh: 0.45  alm: 0.33  top: 0.53  tms: 0.00  mit: 0.43  mip: 0.03
 nuc: 0.07  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: mitochondrial
	 28.0 %: cytoplasmic
	 12.0 %: nuclear
	  8.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: extracellular, including cell wall
	  4.0 %: peroxisomal

>> prediction for SSH711 is mit
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSH711Z
3' end seq. 
>SSH711Z.Seq
----------TCACGTTCAGCTCGTGCCGGTATCACTTTCCCAGTATCTCGTGTTGATAG
ATTATTACGTGAAGGTAGATTCGCTCCACGTGTTGAAAGTACCGCACCAGTCTATTTAGC
TGCCGTCCTTGAATATTTAGTATTTGAAATTTTAGAGTTAGCTCACAATACTTGTTCAAT
CAGTAAAAAGACCCGTATCACACCACAACACATCAACTGGGCCGTCGGTAATGATCTTGA
ATTAAATTCTCTCTTCCAACACGTTACCATCGCCTACGGTGGTGTTTTACCAACTCCACA
ACAATCCACCGGTGAAAAGAAGAAGAAACCATCAAAGAAAGCAGCTGAAGGTTCATCTCA
AATCTATTAAGGTGTTTTTTTAAAATTCTAAA
Length of 3' end seq. 382
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -