NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSH709
Library SS
(Link to library)
Clone ID SSH709
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16354-1
Original site URL
Representative seq. ID SSH709Z
(Link to Original site)
Representative DNA sequence 
>SSH709 (SSH709Q) /CSM/SS/SSH7-A/SSH709Q.Seq.d/
XXXXXXXXXXACATCTGTAACAACTTCTTGAAAGGCTATGACACTGATAAGGATGGAAGG
ATCTCATGGGATGAAGTATGCAATTGGGTAAATAAAAACAATCCAGATGCAATTGCTCCA
CTTATGATTGTTGAAAATTTCTTTAGTGAATTGGATAAAGATAATGACAGATTCGTAACC
AAGTGTGAACTTCAGGAGTACGTTACTAAATACAAAAGTCTCCCAGAACAATAAATAATT
TATTGTTCAAATTCAATAATTATTAATCAACATTTATAATTTTCATTTTTAAAAAAATTT
AAATAAATAAATAAATAAAAAATAATCTTTTAAAAAT
sequence update 1998. 3.12
Translated Amino Acid sequence 
---ICNNFLKGYDTDKDGRISWDEVCNWVNKNNPDAIAPLMIVENFFSELDKDNDRFVTK
CELQEYVTKYKSLPEQ*iiycsnsiiinqhl*fsflkkfk*ink*kiif*k
Translated Amino Acid sequence (All Frames) 
Frame A:
---hl*qllerl*h**gwkdlmg*smqlgk*kqsrcncstydc*kfl**ig*r**qirnq
v*tsgvry*iqksprtinnllfkfnny*stfiififkki*ink*iknnllk


Frame B:
---ICNNFLKGYDTDKDGRISWDEVCNWVNKNNPDAIAPLMIVENFFSELDKDNDRFVTK
CELQEYVTKYKSLPEQ*iiycsnsiiinqhl*fsflkkfk*ink*kiif*k


Frame C:
---svtts*kamtlirmegshgmkyaig*iktiqmqllhl*llkislvnwikimtds*ps
vnfrstllntkvsqnnk*fivqiq*lliniynfhf*knlnk*inkk*sfkn
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM854 (SSM854Q) /CSM/SS/SSM8-C/SSM854Q.Seq.d/                        551   e-156
SSM706 (SSM706Q) /CSM/SS/SSM7-A/SSM706Q.Seq.d/                        551   e-156
SSM673 (SSM673Q) /CSM/SS/SSM6-D/SSM673Q.Seq.d/                        551   e-156
SSM465 (SSM465Q) /CSM/SS/SSM4-C/SSM465Q.Seq.d/                        551   e-156
SSM417 (SSM417Q) /CSM/SS/SSM4-A/SSM417Q.Seq.d/                        551   e-156
SSM408 (SSM408Q) /CSM/SS/SSM4-A/SSM408Q.Seq.d/                        551   e-156
SSM376 (SSM376Q) /CSM/SS/SSM3-D/SSM376Q.Seq.d/                        551   e-156
SSM294 (SSM294Q) /CSM/SS/SSM2-D/SSM294Q.Seq.d/                        551   e-156
SSM193 (SSM193Q) /CSM/SS/SSM1-D/SSM193Q.Seq.d/                        551   e-156
SSL765 (SSL765Q) /CSM/SS/SSL7-C/SSL765Q.Seq.d/                        551   e-156
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

X82784|X82784.1 D.discoideum mRNA for calcium binding protein.   551  e-153  1
AC116987|AC116987.2 Dictyostelium discoideum chromosome 2 map 3527441-3568052 strain AX4, complete sequence.   551  e-153  1
AL354807|AL354807.6 Human DNA sequence from clone RP11-522F22 on chromosome 13.    42  0.009  4
AC027274|AC027274.7 Homo sapiens chromosome 16 clone CTA-330E4, WORKING DRAFT SEQUENCE, 2 ordered pieces.    38  0.080  3
AL353772|AL353772.14 Human DNA sequence from clone RP11-465H8 on chromosome 9. Contains  an STS and GSSs.    36  0.45  5
AC009110|AC009110.10 Homo sapiens chromosome 16 clone RP11-467O15, complete sequence.    38  0.47  4
AC026535|AC026535.3 Homo sapiens chromosome 1 clone RP11-368K17 map 1, WORKING DRAFT SEQUENCE, 12 unordered pieces.    36  0.86  4
AC110201|AC110201.3 Mus musculus clone RP23-214G22, WORKING DRAFT SEQUENCE, 12 unordered pieces.    44  1.1  1
AC094083|AC094083.4 Homo sapiens chromosome 16 clone CTD-2012B15, complete sequence.    38  1.1  2
AC137558|AC137558.2 Mus musculus chromosome UNK clone RP23-16I17, WORKING DRAFT SEQUENCE, 15 unordered pieces.    40  1.2  3
dna update 2003. 8. 8
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR940353_624(CR940353|pid:none) Theileria annulata strain Ankara...    44   0.002
AJ297597_1(AJ297597|pid:none) Dictyostelium discoideum mRNA for ...    44   0.002
(Q54RF4) RecName: Full=Calcium-binding protein 4a;                     44   0.002
(Q54QU0) RecName: Full=Calcium-binding protein F-like; AltName: ...    40   0.033
AE017347_77(AE017347|pid:none) Cryptococcus neoformans var. neof...    38   0.095
AL844509_371(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    38   0.095
AM910994_159(AM910994|pid:none) Plasmodium knowlesi strain H chr...    38   0.095
CP001147_1351(CP001147|pid:none) Thermodesulfovibrio yellowstoni...    37   0.21
(Q9LF55) RecName: Full=Probable calcium-binding protein CML32; A...    36   0.47
T24672(T24672) hypothetical protein T07G12.1 - Caenorhabditis el...    35   0.62
protein update 2009. 6.13
PSORT 

 psg: 0.41  gvh: 0.27  alm: 0.47  top: 0.53  tms: 0.00  mit: 0.23  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 60.0 %: nuclear
	 20.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for SSH709 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSH709Z
3' end seq. 
>SSH709Z.Seq
----------ACATCTGTAACAACTTCTTGAAAGGCTATGACACTGATAAGGATGGAAGG
ATCTCATGGGATGAAGTATGCAATTGGGTAAATAAAAACAATCCAGATGCAATTGCTCCA
CTTATGATTGTTGAAAATTTCTTTAGTGAATTGGATAAAGATAATGACAGATTCGTAACC
AAGTGTGAACTTCAGGAGTACGTTACTAAATACAAAAGTCTCCCAGAACAATAAATAATT
TATTGTTCAAATTCAATAATTATTAATCAACATTTATAATTTTCATTTTTAAAAAAATTT
AAATAAATAAATAAATAAAAAATAATCTTTTAAAAAT
Length of 3' end seq. 327
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -