>SSH695 (SSH695Q) /CSM/SS/SSH6-D/SSH695Q.Seq.d/
AATAAAATAAAAAAAACTTCATAGTTGTACGATTACTCCCTTTTATATATAAATTTCTCA
ATACATATTATTATAATTATGAGTTCGTATAATGGTAAAACTATTCAACAATCATTAGAT
GATAATGGTATTGTTTTATTTAGGAAAAACGAATTAAATAACAATAATAATAATAATAAT
TTAAACAATAATAATAATAATAATAATAATAATAATTTAAATAATAAAATAAATCTACCT
GCATTTGGTAAAAAGAXXXXXXXXXX

nkikkts*LYDYSLLYINFSIHIIIIMSSYNGKTIQQSLDDNGIVLFRKNELNNNNNNNN
LNNNNNNNNNNNLNNKINLPAFGKK---

Frame A:
nkikkts*LYDYSLLYINFSIHIIIIMSSYNGKTIQQSLDDNGIVLFRKNELNNNNNNNN
LNNNNNNNNNNNLNNKINLPAFGKK---


Frame B:
ik*kklhsctitpfyi*isqyill*l*vrimvklfnnh*mimvlfylgktn*itiiiiii
*tiiiiiiiiii*iik*iylhlvk---


Frame C:
*nkknfivvrllpfiykflntyyynyefv*w*nystiir**wycfi*ekrik*q*****f
kq*********fk**nkstciw*k---

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSH695 (SSH695Q) /CSM/SS/SSH6-D/SSH695Q.Seq.d/                        268   4e-71
VFN878 (VFN878Q) /CSM/VF/VFN8-D/VFN878Q.Seq.d/                         40   0.016
VSJ164 (VSJ164Q) /CSM/VS/VSJ1-C/VSJ164Q.Seq.d/                         38   0.064
VSI480 (VSI480Q) /CSM/VS/VSI4-D/VSI480Q.Seq.d/                         38   0.064
VSH788 (VSH788Q) /CSM/VS/VSH7-D/VSH788Q.Seq.d/                         38   0.064
VSH184 (VSH184Q) /CSM/VS/VSH1-D/VSH184Q.Seq.d/                         38   0.064
VSG840 (VSG840Q) /CSM/VS/VSG8-B/VSG840Q.Seq.d/                         38   0.064
VSG503 (VSG503Q) /CSM/VS/VSG5-A/VSG503Q.Seq.d/                         38   0.064
VSG341 (VSG341Q) /CSM/VS/VSG3-B/VSG341Q.Seq.d/                         38   0.064
VSF242 (VSF242Q) /CSM/VS/VSF2-B/VSF242Q.Seq.d/                         38   0.064

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BX628532|BX628532.1 Anopheles gambiae EST, clone ANGNP1404D11T7.    44  0.83  1
BM577635|BM577635.1 17000659322446 A.Gam.ad.cDNA.blood1 Anopheles gambiae cDNA clone 19600447013605 5', mRNA sequence.    44  0.83  1
BM600381|BM600381.1 17000687053817 A.Gam.ad.cDNA.blood1 Anopheles gambiae cDNA clone 19600449716431 5', mRNA sequence.    44  0.83  1
BX510955|BX510955.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone.    42  3.3  1
BX324232|BX324232.5 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEY-220B14.    42  3.3  1
BX537124|BX537124.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEY-278I18.    42  3.3  1
AC023261|AC023261.3 Homo sapiens chromosome 7 clone RP11-377L21 map 7, WORKING DRAFT SEQUENCE, 22 unordered pieces.    42  3.3  1
AC090889|AC090889.3 Canis familiaris clone RP81-156O18, complete sequence.    42  3.3  1
AL163171|AL163171.4 Human chromosome 14 DNA sequence *** IN PROGRESS *** BAC R-406A9 of  library RPCI-11 from chromosome 14 of Homo sapiens (Human).    42  3.3  1
AC111210|AC111210.4 Rattus norvegicus clone CH230-212J4, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces.    42  3.3  1

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3159261
Number of Hits to DB: 251,945,676

 psg: 0.75  gvh: 0.42  alm: 0.34  top: 0.53  tms: 0.00  mit: 0.25  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 40.0 %: nuclear
	  8.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for SSH695 is cyt

>SSH695F.Seq
AATAAAATAAAAAAAACTTCATAGTTGTACGATTACTCCCTTTTATATATAAATTTCTCA
ATACATATTATTATAATTATGAGTTCGTATAATGGTAAAACTATTCAACAATCATTAGAT
GATAATGGTATTGTTTTATTTAGGAAAAACGAATTAAATAACAATAATAATAATAATAAT
TTAAACAATAATAATAATAATAATAATAATAATAATTTAAATAATAAAATAAATCTACCT
GCATTTGGTAAAAAGA----------