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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSH692
Library SS
(Link to library)
Clone ID SSH692
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16296-1
Original site URL
Representative seq. ID SSH692Z
(Link to Original site)
Representative DNA sequence 
>SSH692 (SSH692Q) /CSM/SS/SSH6-D/SSH692Q.Seq.d/
XXXXXXXXXXTGATGCTGTTGAGTGGCAATTTTATATTGGTGGTGTATTTGATATTCCAT
GTAATCCAAATTCACTTGATCATGGTATTTTAATTGTTGGTTACTCTGCTAAAAATACAA
TTTTCCGTAAAAATATGCCATATTGGATTGTAAAGAATTCTTGGGGTGCAGATTGGGGAG
AACAAGGATACATTTATTTAAGAAGAGGAAAGAATACATGTGGTGTATCAAACTTTGTTT
CAACTAGTATAATTTAAATTTATACCAAATATTTAGTTTAGAAAAAAAAAAAAAAAAAA
sequence update 1998. 4.23
Translated Amino Acid sequence 
---DAVEWQFYIGGVFDIPCNPNSLDHGILIVGYSAKNTIFRKNMPYWIVKNSWGADWGE
QGYIYLRRGKNTCGVSNFVSTSII*iytkylv*kkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
---DAVEWQFYIGGVFDIPCNPNSLDHGILIVGYSAKNTIFRKNMPYWIVKNSWGADWGE
QGYIYLRRGKNTCGVSNFVSTSII*iytkylv*kkkkkk


Frame B:
---mllsgnfilvvylifhviqihlimvf*llvtllkiqfsvkichigl*rilgvqigen
kdtfi*eeerihvvyqtlfqlv*fkfipni*frkkkkk


Frame C:
---cc*vailywwci*ysm*skft*swyfncwllc*kynfp*kyaildckeflgcrlgrt
rihlfkkrkeymwciklcfn*ynlnlyqifslekkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM804 (SSM804Q) /CSM/SS/SSM8-A/SSM804Q.Seq.d/                        537   e-152
SSL190 (SSL190Q) /CSM/SS/SSL1-D/SSL190Q.Seq.d/                        537   e-152
SSK793 (SSK793Q) /CSM/SS/SSK7-D/SSK793Q.Seq.d/                        537   e-152
SSJ694 (SSJ694Q) /CSM/SS/SSJ6-D/SSJ694Q.Seq.d/                        537   e-152
SSH838 (SSH838Q) /CSM/SS/SSH8-B/SSH838Q.Seq.d/                        537   e-152
SSH804 (SSH804Q) /CSM/SS/SSH8-A/SSH804Q.Seq.d/                        537   e-152
SSH692 (SSH692Q) /CSM/SS/SSH6-D/SSH692Q.Seq.d/                        537   e-152
SSH510 (SSH510Q) /CSM/SS/SSH5-A/SSH510Q.Seq.d/                        537   e-152
SSG615 (SSG615Q) /CSM/SS/SSG6-A/SSG615Q.Seq.d/                        537   e-152
SSF512 (SSF512Q) /CSM/SS/SSF5-A/SSF512Q.Seq.d/                        537   e-152
own update 2001.11.12
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

X02407|X02407.1 D.discoideum mRNA for cysteine proteinase 1.     537  e-149  1
AJ510164|AJ510164.1 Cloning vector pDXA-3strep.                  216  7e-55  2
X85119|X85119.1 Artificial sequences cloning vector DNA pDXA-3H.   216  7e-55  2
X85122|X85122.1 Artificial sequences cloning vector DNA pDXA-HY.   216  7e-55  2
AJ510165|AJ510165.1 Cloning vector pDXA-3FLAG.                   216  7e-55  2
X85118|X85118.1 Artificial sequences cloning vector DNA pDXA-3C.   216  7e-55  2
X85123|X85123.1 Artificial sequences cloning vector DNA pDXA-HC.   216  7e-55  2
AF269236|AF269236.1 Cloning vector pDXA-FLAG, complete sequence.   216  7e-55  2
X85120|X85120.1 Artificial sequences cloning vector DNA pDXD-3H.   216  8e-55  2
AJ510166|AJ510166.1 Cloning vector pDXA-GST.                     216  8e-55  2
dna update 2003. 8. 8
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P04988) RecName: Full=Cysteine proteinase 1;          EC=3.4.22...   179   3e-44
DQ459306_1(DQ459306|pid:none) Aedes aegypti cathepsin L (CAT-L4)...    95   6e-19
DQ294220_1(DQ294220|pid:none) Glossina morsitans morsitans TC183...    95   8e-19
AY390282_1(AY390282|pid:none) Periserrula leucophryna cysteine p...    91   1e-17
(Q9VN93) RecName: Full=Putative cysteine proteinase CG12163;    ...    90   2e-17
AE014297_190(AE014297|pid:none) Drosophila melanogaster chromoso...    90   2e-17
FJ907947_1(FJ907947|pid:none) Drosophila silvestris clone sv3E-Z...    90   3e-17
U42758_1(U42758|pid:none) Naegleria fowleri cysteine proteinase ...    89   4e-17
EF538806_1(EF538806|pid:none) Trypanoplasma borreli cathepsin L ...    87   2e-16
AB267820_1(AB267820|pid:none) Ipomoea nil In15 mRNA for cysteine...    87   2e-16
protein update 2009. 6.13
PSORT 

 psg: 0.75  gvh: 0.33  alm: 0.49  top: 0.53  tms: 0.00  mit: 0.07  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 24.0 %: cytoplasmic
	 12.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for SSH692 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSH692Z
3' end seq. 
>SSH692Z.Seq
----------TGATGCTGTTGAGTGGCAATTTTATATTGGTGGTGTATTTGATATTCCAT
GTAATCCAAATTCACTTGATCATGGTATTTTAATTGTTGGTTACTCTGCTAAAAATACAA
TTTTCCGTAAAAATATGCCATATTGGATTGTAAAGAATTCTTGGGGTGCAGATTGGGGAG
AACAAGGATACATTTATTTAAGAAGAGGAAAGAATACATGTGGTGTATCAAACTTTGTTT
CAACTAGTATAATTTAAATTTATACCAAATATTTAGTTTAGAAAAAAAAAAAAAAAAAA
Length of 3' end seq. 289
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -