SSH681
Library SS
(Link to library)
Clone ID SSH681
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U09422-1
Original site URL
Representative seq. ID SSH681P
(Link to Original site)
Representative DNA sequence
>SSH681 (SSH681Q) /CSM/SS/SSH6-D/SSH681Q.Seq.d/
ATAACTATTAATTAAATAAACATATATATTATATATATAATAAATAAAAAAATAAAAAAC
AAAATAAAATGAAAATTATTTATTCATTAATTTCAATAATTTTAATAATTTCAATTTGTA
ATGCAATTAAAATGAAAAATTCAAATAATGATGCAAAATCATTATGGATTAATTTCCTTC
CATATGATGAAAATTGTGAAAAACCAGTTCCAGGTATGGGATTTGGTTCATTAGGAGCTG
GACCTTGTTCACTCAATTATACTGCTGAAACATCAGGAAGTCAATGGACATTTTTCGTTG
ATGAXXXXXXXXXXTGTTCCAGGTCCAACCAAAGTATTTAAAGTTGGTCAATGTGCACAA
TATGATAATTTACAAAATACCAATTATATGGTAACAGTAACAAAAGAACCACAAATTCCA
AATGGAGTTTATTTAATTTATAATAAGGATGAATTTTGTCTAGCTTATCAAAATTATTGG
TTTTATACCCCAGGAACTGAAATTAATAACTTTGATGGTAATCAAACTATGACTTTTTCT
TGCAAACATGGTGTTGCTTATACAACTCAATGTGTTACTGAATCAAATTGTTTAACATTA
AAGAGCTCAACAACTTGTGGTTTTTTAACTGGATATTATGCTGATATTTATTGCACTTAA
AAAAATAAA
sequence update 1999. 1.17
Translated Amino Acid sequence
ny*lnkhiyyiynk*KNKKQNKMKIIYSLISIILIISICNAIKMKNSNNDAKSLWINFLP
YDENCEKPVPGMGFGSLGAGPCSLNYTAETSGSQWTFFVD---

---VPGPTKVFKVGQCAQYDNLQNTNYMVTVTKEPQIPNGVYLIYNKDEFCLAYQNYWFY
TPGTEINNFDGNQTMTFSCKHGVAYTTQCVTESNCLTLKSSTTCGFLTGYYADIYCT*kn
k


Translated Amino Acid sequence (All Frames)
Frame A:
itin*iniyiiyiinkkiknkik*klfih*fq*f**fqfvmqlk*kiqimmqnhyglisf
hmmkivknqfqvwdlvh*eldlvhsiillkhqevnghfslm---

---csrsnqsi*swsmcti**ftkyqlygnsnkrttnskwslfnl**g*ilsslskllvl
yprn*n**l*w*snydfflqtwcclynsmcy*iklfnikelnnlwffnwilc*yllhlkk
*

Frame B:
*llik*tyilyi**ikk*ktk*nenylfinfnnfnnfnl*cn*nekfk**ckiimd*fps
i**kl*ktssrygiwfirswtlftqlyc*nirksmdifr**---

---VPGPTKVFKVGQCAQYDNLQNTNYMVTVTKEPQIPNGVYLIYNKDEFCLAYQNYWFY
TPGTEINNFDGNQTMTFSCKHGVAYTTQCVTESNCLTLKSSTTCGFLTGYYADIYCT*kn
k

Frame C:
ny*lnkhiyyiynk*KNKKQNKMKIIYSLISIILIISICNAIKMKNSNNDAKSLWINFLP
YDENCEKPVPGMGFGSLGAGPCSLNYTAETSGSQWTFFVD---

---fqvqpkylklvnvhnmiiykipiiw*q*qknhkfqmefi*fiirmnfv*likiigfi
pqelklitlmvikl*lflanmvlliqlnvllnqiv*h*raqqlvvf*ldimlifialkki

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSH681 (SSH681Q) /CSM/SS/SSH6-D/SSH681Q.Seq.d/ 930 0.0
VFM324 (VFM324Q) /CSM/VF/VFM3-A/VFM324Q.Seq.d/ 38 0.17
VSF524 (VSF524Q) /CSM/VS/VSF5-A/VSF524Q.Seq.d/ 36 0.66
VHJ263 (VHJ263Q) /CSM/VH/VHJ2-C/VHJ263Q.Seq.d/ 36 0.66
VHD706 (VHD706Q) /CSM/VH/VHD7-A/VHD706Q.Seq.d/ 36 0.66
VFC679 (VFC679Q) /CSM/VF/VFC6-D/VFC679Q.Seq.d/ 36 0.66
SSH574 (SSH574Q) /CSM/SS/SSH5-D/SSH574Q.Seq.d/ 36 0.66
SSA719 (SSA719Q) /CSM/SS/SSA7-A/SSA719Q.Seq.d/ 36 0.66
SFL461 (SFL461Q) /CSM/SF/SFL4-C/SFL461Q.Seq.d/ 36 0.66
SFK620 (SFK620Q) /CSM/SF/SFK6-A/SFK620Q.Seq.d/ 36 0.66

own update 2009. 4. 4
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

A63279|A63279.1 Sequence 19 from Patent WO9723619. 40 0.38 2
AC092013|AC092013.3 Homo sapiens chromosome 7 clone RP11-695L4, complete sequence. 36 0.70 3
AX458554|AX458554.1 Sequence 100 from Patent WO0246454. 44 2.2 1
AL512659|AL512659.6 Human DNA sequence from clone RP11-319L6 on chromosome 13. 40 2.7 2
AL606482|AL606482.14 Mouse DNA sequence from clone RP23-360H16 on chromosome 11. 40 4.8 3
AL450315|AL450315.2 Human DNA sequence *** SEQUENCING IN PROGRESS *** from clone RP11-479H20. 42 5.3 2
AC040898|AC040898.2 Homo sapiens chromosome 6 clone RP11-157P9 map 6, WORKING DRAFT SEQUENCE, 32 unordered pieces. 42 8.6 1
BQ849563|BQ849563.1 QGB10D18.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGB10D18, mRNA sequence. 42 8.6 1
AJ272003|AJ272003.1 Candida albicans sho1 gene for SHO1 osmosensor protein. 42 8.6 1
BQ865751|BQ865751.1 QGC5M13.yg.ab1 QG_ABCDI lettuce salinas Lactuca sativa cDNA clone QGC5M13, mRNA sequence. 42 8.6 1
dna update 2003. 8. 8
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

CP000360_957(CP000360|pid:none) Acidobacteria bacterium Ellin345... 34 4.3
BA000045_3269(BA000045|pid:none) Gloeobacter violaceus PCC 7421 ... 34 4.3
CP000685_3088(CP000685|pid:none) Flavobacterium johnsoniae UW101... 33 7.5

protein update 2009. 1.31
PSORT

psg: 0.98 gvh: 0.64 alm: 0.23 top: 0.27 tms: 0.07 mit: 0.31 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

28.0 %: endoplasmic reticulum
20.0 %: cytoplasmic
16.0 %: nuclear
12.0 %: Golgi
12.0 %: mitochondrial
4.0 %: extracellular, including cell wall
4.0 %: plasma membrane
4.0 %: vesicles of secretory system

>> prediction for SSH681 is end

5' end seq. ID SSH681F
5' end seq.
>SSH681F.Seq
ATAACTATTAATTAAATAAACATATATATTATATATATAATAAATAAAAAAATAAAAAAC
AAAATAAAATGAAAATTATTTATTCATTAATTTCAATAATTTTAATAATTTCAATTTGTA
ATGCAATTAAAATGAAAAATTCAAATAATGATGCAAAATCATTATGGATTAATTTCCTTC
CATATGATGAAAATTGTGAAAAACCAGTTCCAGGTATGGGATTTGGTTCATTAGGAGCTG
GACCTTGTTCACTCAATTATACTGCTGAAACATCAGGAAGTCAATGGACATTTTTCGTTG
ATGA----------
Length of 5' end seq. 304
3' end seq. ID SSH681Z
3' end seq.
>SSH681Z.Seq
----------TGTTCCAGGTCCAACCAAAGTATTTAAAGTTGGTCAATGTGCACAATATG
ATAATTTACAAAATACCAATTATATGGTAACAGTAACAAAAGAACCACAAATTCCAAATG
GAGTTTATTTAATTTATAATAAGGATGAATTTTGTCTAGCTTATCAAAATTATTGGTTTT
ATACCCCAGGAACTGAAATTAATAACTTTGATGGTAATCAAACTATGACTTTTTCTTGCA
AACATGGTGTTGCTTATACAACTCAATGTGTTACTGAATCAAATTGTTTAACATTAAAGA
GCTCAACAACTTGTGGTTTTTTAACTGGATATTATGCTGATATTTATTGCACTTAAAAAA
ATAAA
Length of 3' end seq. 355
Connected seq. ID SSH681P
Connected seq.
>SSH681P.Seq
ATAACTATTAATTAAATAAACATATATATTATATATATAATAAATAAAAAAATAAAAAAC
AAAATAAAATGAAAATTATTTATTCATTAATTTCAATAATTTTAATAATTTCAATTTGTA
ATGCAATTAAAATGAAAAATTCAAATAATGATGCAAAATCATTATGGATTAATTTCCTTC
CATATGATGAAAATTGTGAAAAACCAGTTCCAGGTATGGGATTTGGTTCATTAGGAGCTG
GACCTTGTTCACTCAATTATACTGCTGAAACATCAGGAAGTCAATGGACATTTTTCGTTG
ATGA----------TGTTCCAGGTCCAACCAAAGTATTTAAAGTTGGTCAATGTGCACAA
TATGATAATTTACAAAATACCAATTATATGGTAACAGTAACAAAAGAACCACAAATTCCA
AATGGAGTTTATTTAATTTATAATAAGGATGAATTTTGTCTAGCTTATCAAAATTATTGG
TTTTATACCCCAGGAACTGAAATTAATAACTTTGATGGTAATCAAACTATGACTTTTTCT
TGCAAACATGGTGTTGCTTATACAACTCAATGTGTTACTGAATCAAATTGTTTAACATTA
AAGAGCTCAACAACTTGTGGTTTTTTAACTGGATATTATGCTGATATTTATTGCACTTAA
AAAAATAAA
Length of connected seq. 659
Full length Seq ID -
Full length Seq. -
Length of full length seq. -