>SSH675 (SSH675Q) /CSM/SS/SSH6-D/SSH675Q.Seq.d/
XXXXXXXXXXCTCGTGATTCAATTCAAAAAGATAGATTAGCAATCCTCTCTGAAGATCAA
ATGAAAGTTTACAAATGTCACACCATTATGAATTGTACTGCTGTTTGTCCAAAAGGTTTA
AATCCAGGTAAAAGTATTGCTAATATTAAATATTTATTAGCACACAATTAATTTTTTTAC
CAATTAAACTTTATTTTATAAAAAAAACAAAACAAAACAACATTCAAAAATAATAATAAT
AATAATAATAATAATAATAATAATTATTTTTTTAAATAATAATTTTCATTTTAATTTAAA
TAATATAAATAATAATAATTATAACAAAATTAAAA

---RDSIQKDRLAILSEDQMKVYKCHTIMNCTAVCPKGLNPGKSIANIKYLLAHN*ffyq
lnfil*kkqnkttfknnnnnnnnnnnnyffk**fsf*fk*yk***l*qn*

Frame A:
---s*fnskr*isnpl*rsneslqmshhyelycclskrfksr*kyc*y*ifistqliflp
iklyfikktkqnniqk***********lff*iiifili*ii*iiiiitklk


Frame B:
---RDSIQKDRLAILSEDQMKVYKCHTIMNCTAVCPKGLNPGKSIANIKYLLAHN*ffyq
lnfil*kkqnkttfknnnnnnnnnnnnyffk**fsf*fk*yk***l*qn*


Frame C:
---viqfkkid*qsslkik*kftnvtpl*ivllfvqkv*iqvkvllilniy*htinfftn
*tlfykknktkqhskiiiiiiiiiiiiiflnnnfhfnlnninnnnynkik

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSA690 (VSA690Q) /CSM/VS/VSA6-D/VSA690Q.Seq.d/                        333   1e-90
VFN649 (VFN649Q) /CSM/VF/VFN6-C/VFN649Q.Seq.d/                        333   1e-90
VFJ293 (VFJ293Q) /CSM/VF/VFJ2-D/VFJ293Q.Seq.d/                        333   1e-90
SSH675 (SSH675Q) /CSM/SS/SSH6-D/SSH675Q.Seq.d/                        333   1e-90
SSH565 (SSH565Q) /CSM/SS/SSH5-C/SSH565Q.Seq.d/                        333   1e-90
AFI476 (AFI476Q) /CSM/AF/AFI4-D/AFI476Q.Seq.d/                        333   1e-90
VFI723 (VFI723Q) /CSM/VF/VFI7-A/VFI723Q.Seq.d/                        309   1e-83
SSK450 (SSK450Q) /CSM/SS/SSK4-C/SSK450Q.Seq.d/                        262   3e-69
SSF569 (SSF569Q) /CSM/SS/SSF5-C/SSF569Q.Seq.d/                        212   2e-54
SSF428 (SSF428Q) /CSM/SS/SSF4-B/SSF428Q.Seq.d/                        184   6e-46

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

BQ596432|BQ596432.1 PfESToab33g01.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum 3D7 cDNA 5' similar to TR:Q94652 Q94652 IRON-SULFUR SUBUNIT OF SUCCINATE DEHYDROGENASE. ;, mRNA sequence.    38  0.073  2
BI816352|BI816352.1 PfESToaa39d09.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to TR:Q94652 Q94652 IRON-SULFUR SUBUNIT OF SUCCINATE DEHYDROGENASE. ;, mRNA sequence.    38  0.10  2
BQ596952|BQ596952.1 PfESToab24g06.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to TR:Q94652 Q94652 IRON-SULFUR SUBUNIT OF SUCCINATE DEHYDROGENASE. ;, mRNA sequence.    38  0.11  2
AF217618|AF217618.1 Plasmodium falciparum succinate dehydrogenase iron-sulfur subunit gene, complete cds.    38  0.18  2
D86574|D86574.1 Plasmodium falciparum DNA for iron-sulfur subunit of succinate dehydrogenase, complete cds.    38  0.21  2
BI773288|BI773288.1 pa57b07.y1 Hawdon Ancylostoma caninum L3 Ancylostoma caninum cDNA 5' similar to SW:DHSB_CAEEL Q09545 PUTATIVE SUCCINATE DEHYDROGENASE [UBIQUINONE] IRON-SULFUR PROTEIN, MITOCHONDRIAL PRECURSOR ;, mRNA sequence.    46  0.27  1
BI773309|BI773309.1 pa94g01.y1 Hawdon Ancylostoma caninum L3 Ancylostoma caninum cDNA 5' similar to SW:DHSB_CAEEL Q09545 PUTATIVE SUCCINATE DEHYDROGENASE [UBIQUINONE] IRON-SULFUR PROTEIN, MITOCHONDRIAL PRECURSOR ;, mRNA sequence.    46  0.27  1
BB201463|BB201463.1 Mus musculus 0 day neonate thymus cDNA, RIKEN full-length enriched library, clone:A430038I15, 3' end partial sequence, similar to ddbj:M25143 Rat cytochrome P450CMF1b mRNA.    36  0.61  2
AG098807|AG098807.1 Pan troglodytes DNA, clone: PTB-100O08.F.     44  1.1  1
AC140761|AC140761.2 Rattus norvegicus clone CH230-197J2, *** SEQUENCING IN PROGRESS ***, 4 unordered pieces.    42  4.2  1

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B58930(B58930) succinate dehydrogenase (ubiquinone) (EC 1.3.5.1)...    68   9e-11
AK169839_1(AK169839|pid:none) Mus musculus 2 days neonate thymus...    68   1e-10
U17886_1(U17886|pid:none) Human succinate dehydrogenase iron-pro...    67   3e-10
(P21912) RecName: Full=Succinate dehydrogenase [ubiquinone] iron...    67   3e-10
(Q3T189) RecName: Full=Succinate dehydrogenase [ubiquinone] iron...    67   3e-10
I38895(I38895;I38206;A34045;A32394) succinate dehydrogenase (ubi...    67   3e-10
D10245_1(D10245|pid:none) Homo sapiens sdh B mRNA for succinate-...    67   3e-10
(P21913) RecName: Full=Succinate dehydrogenase [ubiquinone] iron...    67   3e-10
(Q9YHT2) RecName: Full=Succinate dehydrogenase [ubiquinone] iron...    66   3e-10
BT047601_1(BT047601|pid:none) Salmo salar clone ssal-eve-538-282...    65   6e-10

 psg: 0.64  gvh: 0.30  alm: 0.54  top: 0.53  tms: 0.00  mit: 0.33  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 28.0 %: cytoplasmic
	 24.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for SSH675 is nuc

>SSH675Z.Seq
----------CTCGTGATTCAATTCAAAAAGATAGATTAGCAATCCTCTCTGAAGATCAA
ATGAAAGTTTACAAATGTCACACCATTATGAATTGTACTGCTGTTTGTCCAAAAGGTTTA
AATCCAGGTAAAAGTATTGCTAATATTAAATATTTATTAGCACACAATTAATTTTTTTAC
CAATTAAACTTTATTTTATAAAAAAAACAAAACAAAACAACATTCAAAAATAATAATAAT
AATAATAATAATAATAATAATAATTATTTTTTTAAATAATAATTTTCATTTTAATTTAAA
TAATATAAATAATAATAATTATAACAAAATTAAAA