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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSH669
Library SS
(Link to library)
Clone ID SSH669
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U14093-1
Original site URL
Representative seq. ID SSH669Z
(Link to Original site)
Representative DNA sequence 
>SSH669 (SSH669Q) /CSM/SS/SSH6-C/SSH669Q.Seq.d/
XXXXXXXXXXTATTAATGATAATGATAAAGATGGTGATAGAAAAATTACCAGAGATGAAG
TTCTTCAAAGATTCACTGAACAAGGTGCTGAGGATCCAGAACTTATTACTGATAGTATCT
TCAGACAAATGGATCTTGACCGTGATGGTGTAATCACCTGTGATGAAATCAAAGAATTCA
ACAGAAAGAAGAAATTCAGTTTCCTTAAATCATCAGCACCAAAACAATAAAAAAGAAACA
TTACAAATTCACCCCTTTTTGAAATGTTTTTCTGTTTTTAAATCAGATAATAATAAAATT
AAATGTATTCATTTATTTTTTAAATA
sequence update 1998. 4.23
Translated Amino Acid sequence 
---INDNDKDGDRKITRDEVLQRFTEQGAEDPELITDSIFRQMDLDRDGVITCDEIKEFN
RKKKFSFLKSSAPKQ*krnitnsplfemffcf*ir***n*mysfif*i
Translated Amino Acid sequence (All Frames) 
Frame A:
---INDNDKDGDRKITRDEVLQRFTEQGAEDPELITDSIFRQMDLDRDGVITCDEIKEFN
RKKKFSFLKSSAPKQ*krnitnsplfemffcf*ir***n*mysfif*i


Frame B:
---lmimikmvieklpemkffkdslnkvlriqnlllivssdkwiltvmv*spvmksknst
errnsvslnhqhqnnkketlqihpflkcfsvfksdnnkikcihlffk


Frame C:
---*****rw**knyqr*ssskih*trc*gsrtyy**ylqtngs*p*wcnhl**nqriqq
keeiqfp*iistktikkkhykftpf*nvflflnqiiiklnvfiyfln
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSE834 (VSE834Q) /CSM/VS/VSE8-B/VSE834Q.Seq.d/                        626   e-179
VSD646 (VSD646Q) /CSM/VS/VSD6-B/VSD646Q.Seq.d/                        626   e-179
VSC829 (VSC829Q) /CSM/VS/VSC8-B/VSC829Q.Seq.d/                        626   e-179
SSM118 (SSM118Q) /CSM/SS/SSM1-A/SSM118Q.Seq.d/                        626   e-179
SSI676 (SSI676Q) /CSM/SS/SSI6-D/SSI676Q.Seq.d/                        626   e-179
SSH669 (SSH669Q) /CSM/SS/SSH6-C/SSH669Q.Seq.d/                        626   e-179
SSH426 (SSH426Q) /CSM/SS/SSH4-B/SSH426Q.Seq.d/                        626   e-179
SSE554 (SSE554Q) /CSM/SS/SSE5-C/SSE554Q.Seq.d/                        626   e-179
SSC165 (SSC165Q) /CSM/SS/SSC1-C/SSC165Q.Seq.d/                        626   e-179
SSA520 (SSA520Q) /CSM/SS/SSA5-A/SSA520Q.Seq.d/                        626   e-179
own update 2002.12.13
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

U55379|U55379.1 Dictyostelium discoideum calcium-binding protein CBP2 gene, complete cds.   551  e-166  2
BM883483|BM883483.1 rc07d03.y1 Meloidogyne hapla egg pAMP1 v1 Meloidogyne hapla cDNA 5', mRNA sequence.    42  0.002  3
BZ079335|BZ079335.1 llg32b08.b1 B.oleracea002 Brassica oleracea genomic, DNA sequence.    44  0.003  2
AC116957|AC116957.2 Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence.    34  0.005  9
AE014825|AE014825.1 Plasmodium falciparum 3D7 chromosome 14 section 10 of 13 of the complete sequence.    36  0.007  9
AC139068|AC139068.1 Homo sapiens clone XXfos-89846G8, WORKING DRAFT SEQUENCE, 1 ordered piece.    44  0.012  5
AC090112|AC090112.2 Pan troglodytes clone RP43-75L6, complete sequence.    34  0.013  6
AC092615|AC092615.3 Homo sapiens BAC clone RP11-204D19 from 2, complete sequence.    36  0.016  6
AL031746|AL031746.9 Plasmodium falciparum DNA from MAL1P3.        36  0.031  7
AL355813|AL355813.12 Human DNA sequence *** SEQUENCING IN PROGRESS *** from clone  RP11-95M17.    38  0.033  5
dna update 2003. 8. 8
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P54653) RecName: Full=Calcium-binding protein 2;  &S62881(S6288...   147   8e-35
(Q54QT7) RecName: Full=Calcium-binding protein C; AltName: Full=...    46   4e-04
(Q54QT9) RecName: Full=Calcium-binding protein F; AltName: Full=...    45   8e-04
AJ297597_1(AJ297597|pid:none) Dictyostelium discoideum mRNA for ...    44   0.002
(Q54RF4) RecName: Full=Calcium-binding protein 4a;                     44   0.002
(Q966Q9) RecName: Full=Calcium-binding protein H; AltName: Full=...    41   0.005
AM484639_1(AM484639|pid:none) Vitis vinifera contig VV78X188705....    42   0.006
(Q54QU0) RecName: Full=Calcium-binding protein F-like; AltName: ...    42   0.008
FB334902_1(FB334902|pid:none) Sequence 2428 from Patent WO200711...    41   0.011
EU181179_1(EU181179|pid:none) Triticum aestivum calcium-dependen...    40   0.032
protein update 2009. 6.13
PSORT 

 psg: 0.75  gvh: 0.22  alm: 0.62  top: 0.53  tms: 0.00  mit: 0.16  mip: 0.00
 nuc: 0.04  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 32.0 %: cytoplasmic
	 16.0 %: cytoskeletal
	  8.0 %: mitochondrial

>> prediction for SSH669 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSH669Z
3' end seq. 
>SSH669Z.Seq
----------TATTAATGATAATGATAAAGATGGTGATAGAAAAATTACCAGAGATGAAG
TTCTTCAAAGATTCACTGAACAAGGTGCTGAGGATCCAGAACTTATTACTGATAGTATCT
TCAGACAAATGGATCTTGACCGTGATGGTGTAATCACCTGTGATGAAATCAAAGAATTCA
ACAGAAAGAAGAAATTCAGTTTCCTTAAATCATCAGCACCAAAACAATAAAAAAGAAACA
TTACAAATTCACCCCTTTTTGAAATGTTTTTCTGTTTTTAAATCAGATAATAATAAAATT
AAATGTATTCATTTATTTTTTAAATA
Length of 3' end seq. 316
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -