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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSH668
Library SS
(Link to library)
Clone ID SSH668
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16129-1
Original site URL
Representative seq. ID SSH668P
(Link to Original site)
Representative DNA sequence 
>SSH668 (SSH668Q) /CSM/SS/SSH6-C/SSH668Q.Seq.d/
AACAAAAAAAATAAATAATAATAATATTAAAAAACAATTTAAAAATAAAAATAATATTGT
TTTTTTTTCTTTTTTTTAACATTTATTTTTTTAAACTACACCACACAAACATATCAAAAA
TTAAATAAACAACAACAACAACAATAAAAATATATATAAAAATTAAAAGAACATAAAATA
TTTAAXXXXXXXXXXCATTTTAATCTATGCAAATAAACANGACTTAAAGGATGCAATGTC
TCCAACTGAATTATCCACTTTACTTTCACTTCATTCAATTAAAGATCATGATTATCATAT
TCAAGCATGTTGTGCTTTAACAGGACAAGGTCTCGAATCAGGTTTGGATTGGTTAGTTTC
ACACATAAACAAATCTTAAGATTTTATTTTGCGCTTCTTATATATACGTGTATTCAATTA
ATTATTTAAGAAATTTTATTTTTACAAAAACAAAAAATAAAAAAAGAAATAAAAAAACAA
AAAAAAAAAACAAAGAAAATCTGTTAAATTATGGTGATAAAATAAAATAAAATTTAAAAA
AAAACTCAATGAAATAA
sequence update 1999. 1.17
Translated Amino Acid sequence 
nkknk***y*kti*k*k*ycfffffltfiflnyttqtyqklnkqqqqq*kyi*KLKEHKI
F---

---ILIYANKXDLKDAMSPTELSTLLSLHSIKDHDYHIQACCALTGQGLESGLDWLVSHI
NKS*dfilrflyirvfn*lfkkfyfyknkk*kkk*knkkkkqrksvklw**nkikfkkkl
nei
Translated Amino Acid sequence (All Frames) 
Frame A:
nkknk***y*kti*k*k*ycfffffltfiflnyttqtyqklnkqqqqq*kyi*KLKEHKI
F---

---hfnlck*txlkgcnvsn*iihftftsfn*rs*lsyssmlcfnrtrsrirfglvsfth
kqilrfyfalliytciqlii*eilflqkqkikkeikkqkkktkkic*imvik*nki*kkt
q*n

Frame B:
tkkinnnnikkqfknknnivffsff*hlff*ttphkhikn*innnnnnkniykn*kniky
l---

---ILIYANKXDLKDAMSPTELSTLLSLHSIKDHDYHIQACCALTGQGLESGLDWLVSHI
NKS*dfilrflyirvfn*lfkkfyfyknkk*kkk*knkkkkqrksvklw**nkikfkkkl
nei

Frame C:
qkk*iiiilknnlkikiilffflffniyffklhhtniskik*tttttikiyikikrt*ni
*---

---f*smqinxt*rmqclqlnyplyfhfiqlkimiiifkhvvl*qdkvsnqvwig*fht*
tnlkilfcasyiyvysinylrnfiftktknkkrnkktkkknkenllnygdkik*nlkkns
mk*
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSH668 (SSH668Q) /CSM/SS/SSH6-C/SSH668Q.Seq.d/                        490   e-137
SSB719 (SSB719Q) /CSM/SS/SSB7-A/SSB719Q.Seq.d/                        490   e-137
SLI103 (SLI103Q) /CSM/SL/SLI1-A/SLI103Q.Seq.d/                        490   e-137
CHP601 (CHP601Q) /CSM/CH/CHP6-A/CHP601Q.Seq.d/                        377   e-103
SSL460 (SSL460Q) /CSM/SS/SSL4-C/SSL460Q.Seq.d/                        359   3e-98
SSI302 (SSI302Q) /CSM/SS/SSI3-A/SSI302Q.Seq.d/                        157   2e-37
SLJ606 (SLJ606Q) /CSM/SL/SLJ6-A/SLJ606Q.Seq.d/                        151   1e-35
SSB867 (SSB867Q) /CSM/SS/SSB8-C/SSB867Q.Seq.d/                         36   0.55
AFD589 (AFD589Q) /CSM/AF/AFD5-D/AFD589Q.Seq.d/                         36   0.55
VSJ404 (VSJ404Q) /CSM/VS/VSJ4-A/VSJ404Q.Seq.d/                         34   2.2
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC116032|AC116032.2 Dictyostelium discoideum chromosome 2 map 4158743-4189373 strain AX4, complete sequence.   280  e-133  4
X59781|X59781.1 D. discoideum tRNA-Val (AAC) 7 gene.              46  0.46  1
AY027725|AY027725.1 Chrysomela tremulae 12S ribosomal RNA gene, partial sequence; mitochondrial gene for mitochondrial product.    46  0.46  1
AC078920|AC078920.17 Homo sapiens 12 BAC RP11-121G22 (Roswell Park Cancer Institute Human BAC Library) complete sequence.    44  0.94  2
AC034286|AC034286.4 Mus musculus chromosome 11 clone RP23-2E22 map 11, WORKING DRAFT SEQUENCE, 5 unordered pieces.    40  1.1  2
AP003190|AP003190.2 Clostridium perfringens DNA, complete genome, section 6/10.    40  1.7  3
AL670958|AL670958.3 Mouse DNA sequence from clone RP23-410K19 on chromosome 4 Contains  the Cer1 gene for cerberus 1 homolog and the gene for a novel  protein similar to extra-cellular matrix proteins and chondroitin  sulfate proteoglycans.    44  1.8  1
AL163281|AL163281.1 Homo sapiens genomic DNA, chromosome 21q, section 80/105.    44  1.8  1
AC134506|AC134506.2 Homo sapiens 12 BAC RP11-717L9 (Roswell Park Cancer Institute Human BAC Library) complete sequence.    44  1.8  1
AL603905|AL603905.19 Mouse DNA sequence from clone RP23-143A14 on chromosome 11.    44  1.8  1
dna update 2003. 8. 8
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

GM977125_1(GM977125|pid:none) Sequence 33 from Patent WO20081456...    87   3e-16
BT033971_1(BT033971|pid:none) Zea mays full-length cDNA clone ZM...    83   4e-15
EU976432_1(EU976432|pid:none) Zea mays clone 882265 ADP-ribosyla...    83   4e-15
AP001300_14(AP001300|pid:none) Arabidopsis thaliana genomic DNA,...    81   2e-14
AY553183_1(AY553183|pid:none) Xenopus laevis ARF related-like pr...    78   1e-13
(Q9Y689) RecName: Full=ADP-ribosylation factor-like protein 5A; ...    77   3e-13
(P51646) RecName: Full=ADP-ribosylation factor-like protein 5A; ...    77   3e-13
DQ138656_1(DQ138656|pid:none) Drosophila melanogaster strain Ral...    76   5e-13
BC078039_1(BC078039|pid:none) Xenopus laevis hypothetical protei...    76   5e-13
BC097668_1(BC097668|pid:none) Xenopus laevis hypothetical protei...    76   5e-13
protein update 2009. 6.13
PSORT 

 psg: 0.88  gvh: 0.40  alm: 0.49  top: 0.23  tms: 0.00  mit: 0.17  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 40.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for SSH668 is cyt
5' end seq. ID SSH668F
5' end seq. 
>SSH668F.Seq
AACAAAAAAAATAAATAATAATAATATTAAAAAACAATTTAAAAATAAAAATAATATTGT
TTTTTTTTCTTTTTTTTAACATTTATTTTTTTAAACTACACCACACAAACATATCAAAAA
TTAAATAAACAACAACAACAACAATAAAAATATATATAAAAATTAAAAGAACATAAAATA
TTTAA----------
Length of 5' end seq. 185
3' end seq. ID SSH668Z
3' end seq. 
>SSH668Z.Seq
----------CATTTTAATCTATGCAAATAAACANGACTTAAAGGATGCAATGTCTCCAA
CTGAATTATCCACTTTACTTTCACTTCATTCAATTAAAGATCATGATTATCATATTCAAG
CATGTTGTGCTTTAACAGGACAAGGTCTCGAATCAGGTTTGGATTGGTTAGTTTCACACA
TAAACAAATCTTAAGATTTTATTTTGCGCTTCTTATATATACGTGTATTCAATTAATTAT
TTAAGAAATTTTATTTTTACAAAAACAAAAAATAAAAAAAGAAATAAAAAAACAAAAAAA
AAAAACAAAGAAAATCTGTTAAATTATGGTGATAAAATAAAATAAAATTTAAAAAAAAAC
TCAATGAAATAA
Length of 3' end seq. 362
Connected seq. ID SSH668P
Connected seq. 
>SSH668P.Seq
AACAAAAAAAATAAATAATAATAATATTAAAAAACAATTTAAAAATAAAAATAATATTGT
TTTTTTTTCTTTTTTTTAACATTTATTTTTTTAAACTACACCACACAAACATATCAAAAA
TTAAATAAACAACAACAACAACAATAAAAATATATATAAAAATTAAAAGAACATAAAATA
TTTAA----------CATTTTAATCTATGCAAATAAACANGACTTAAAGGATGCAATGTC
TCCAACTGAATTATCCACTTTACTTTCACTTCATTCAATTAAAGATCATGATTATCATAT
TCAAGCATGTTGTGCTTTAACAGGACAAGGTCTCGAATCAGGTTTGGATTGGTTAGTTTC
ACACATAAACAAATCTTAAGATTTTATTTTGCGCTTCTTATATATACGTGTATTCAATTA
ATTATTTAAGAAATTTTATTTTTACAAAAACAAAAAATAAAAAAAGAAATAAAAAAACAA
AAAAAAAAAACAAAGAAAATCTGTTAAATTATGGTGATAAAATAAAATAAAATTTAAAAA
AAAACTCAATGAAATAA
Length of connected seq. 547
Full length Seq ID -
Full length Seq. -
Length of full length seq. -