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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSH653
Library SS
(Link to library)
Clone ID SSH653
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15497-1
Original site URL
Representative seq. ID SSH653Z
(Link to Original site)
Representative DNA sequence 
>SSH653 (SSH653Q) /CSM/SS/SSH6-C/SSH653Q.Seq.d/
XXXXXXXXXXGTAAACACGGTCACGCCAAAGTTAACATCACTGCTATCGATATCTTCACT
GGTAAGAAATACGAAGAAATTTGCCCATCAACTCACAACATTGATGTACCAAATGTCAGC
AGAAAGGAATACACCGTTATGGATGTTCAAGATGGTTACTTATCACTCTTGGATGCTGGT
GGTGAAGTCAAAGAAGATCTTGCCCTCCCAGAAGATGATATTGGTAAAGAAATTACCCAA
ATGTTAAAAGAAGGTAAAGAGCCATTAGTTTCAGTCATCTCTGCTTTAGGTAAAGAAGGT
GTCGTCTCTGTTAAAGTCAGCAACAATTAAATTGTTTAAAATTCTCTTTATA
sequence update 1998. 4.23
Translated Amino Acid sequence 
---KHGHAKVNITAIDIFTGKKYEEICPSTHNIDVPNVSRKEYTVMDVQDGYLSLLDAGG
EVKEDLALPEDDIGKEITQMLKEGKEPLVSVISALGKEGVVSVKVSNN*iv*nsly
Translated Amino Acid sequence (All Frames) 
Frame A:
---*trsrqs*hhcyrylhw*eirrnlpinsqh*ctkcqqkgihrygcsrwllitlgcww
*sqrrscpprr*yw*rnypnvkrr*raisfshlcfr*rrcrlc*sqqqlnclkfsl


Frame B:
---KHGHAKVNITAIDIFTGKKYEEICPSTHNIDVPNVSRKEYTVMDVQDGYLSLLDAGG
EVKEDLALPEDDIGKEITQMLKEGKEPLVSVISALGKEGVVSVKVSNN*iv*nsly


Frame C:
---ntvtpkltsllsisslvrntkkfahqlttlmyqmsaerntplwmfkmvtyhswmlvv
kskkilpsqkmilvkklpkc*kkvksh*fqssll*vkkvssllksatiklfkilfi
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VSG552 (VSG552Q) /CSM/VS/VSG5-C/VSG552Q.Seq.d/                        678   0.0
VSE750 (VSE750Q) /CSM/VS/VSE7-C/VSE750Q.Seq.d/                        678   0.0
VSE691 (VSE691Q) /CSM/VS/VSE6-D/VSE691Q.Seq.d/                        678   0.0
VSE527 (VSE527Q) /CSM/VS/VSE5-B/VSE527Q.Seq.d/                        678   0.0
VSE475 (VSE475Q) /CSM/VS/VSE4-D/VSE475Q.Seq.d/                        678   0.0
VSD448 (VSD448Q) /CSM/VS/VSD4-B/VSD448Q.Seq.d/                        678   0.0
VSD284 (VSD284Q) /CSM/VS/VSD2-D/VSD284Q.Seq.d/                        678   0.0
VSB458 (VSB458Q) /CSM/VS/VSB4-C/VSB458Q.Seq.d/                        678   0.0
VSA438 (VSA438Q) /CSM/VS/VSA4-B/VSA438Q.Seq.d/                        678   0.0
VHD324 (VHD324Q) /CSM/VH/VHD3-A/VHD324Q.Seq.d/                        678   0.0
own update 2002.12.13
Homology vs DNA 

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

X14970|X14970.1 Dictyostelium discoideum mRNA for translation initiation factor  eIF-4D.   676   0.0    1
AX001144|AX001144.1 Sequence 5 from Patent WO9901551.             634   e-178  1
AR228401|AR228401.1 Sequence 5 from patent US 6448040.            634   e-178  1
CB451181|CB451181.1 705930 MARC 6BOV Bos taurus cDNA 3', mRNA sequence.    64   3e-08  2
BU293538|BU293538.1 604166963F1 CSEQCHN55 Gallus gallus cDNA clone ChEST1027n16 5', mRNA sequence.    68   9e-08  1
BU110203|BU110203.1 603125708F1 CSEQCHL13 Gallus gallus cDNA clone ChEST94p2 5', mRNA sequence.    68   9e-08  1
BU330872|BU330872.1 603871006F1 CSEQCHN65 Gallus gallus cDNA clone ChEST897l2 5', mRNA sequence.    68   9e-08  1
BU240521|BU240521.1 603322512F1 CSEQCHN33 Gallus gallus cDNA clone ChEST250g4 5', mRNA sequence.    68   9e-08  1
AJ452649|AJ452649.1 Gallus gallus EST, clone library riken1, clone 31l17r1.    68   9e-08  1
BU104411|BU104411.1 603005093F1 CSEQCHL01 Gallus gallus cDNA clone ChEST21i24 5', mRNA sequence.    68   9e-08  1
dna update 2004. 2.14
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(P10160) RecName: Full=Eukaryotic translation initiation factor ...   132   5e-30
AL596185_11(AL596185|pid:none) Mouse DNA sequence from clone RP2...   130   1e-29
(P63241) RecName: Full=Eukaryotic translation initiation factor ...   130   1e-29
AY129319_1(AY129319|pid:none) Homo sapiens eukaryotic initiation...   130   1e-29
CQ871934_1(CQ871934|pid:none) Sequence 11 from Patent WO20040789...   130   1e-29
BC070048_1(BC070048|pid:none) Homo sapiens eukaryotic translatio...   129   3e-29
(Q6IS14) RecName: Full=Eukaryotic translation initiation factor ...   129   3e-29
S72024_1(S72024|pid:none) eif-5A=eukaryotic initiation factor 5A...   129   4e-29
(Q07460) RecName: Full=Eukaryotic translation initiation factor ...   126   2e-28
BT075853_1(BT075853|pid:none) Caligus rogercresseyi clone crog-e...   126   3e-28
protein update 2009. 6.13
PSORT 

 psg: 0.76  gvh: 0.39  alm: 0.39  top: 0.53  tms: 0.00  mit: 0.18  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 36.0 %: nuclear
	 20.0 %: cytoskeletal
	  4.0 %: peroxisomal

>> prediction for SSH653 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSH653Z
3' end seq. 
>SSH653Z.Seq
----------GTAAACACGGTCACGCCAAAGTTAACATCACTGCTATCGATATCTTCACT
GGTAAGAAATACGAAGAAATTTGCCCATCAACTCACAACATTGATGTACCAAATGTCAGC
AGAAAGGAATACACCGTTATGGATGTTCAAGATGGTTACTTATCACTCTTGGATGCTGGT
GGTGAAGTCAAAGAAGATCTTGCCCTCCCAGAAGATGATATTGGTAAAGAAATTACCCAA
ATGTTAAAAGAAGGTAAAGAGCCATTAGTTTCAGTCATCTCTGCTTTAGGTAAAGAAGGT
GTCGTCTCTGTTAAAGTCAGCAACAATTAAATTGTTTAAAATTCTCTTTATA
Length of 3' end seq. 342
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -