SSH647
Library SS
(Link to library)
Clone ID SSH647
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U01803-1
Original site URL
Representative seq. ID SSH647P
(Link to Original site)
Representative DNA sequence
>SSH647 (SSH647Q) /CSM/SS/SSH6-B/SSH647Q.Seq.d/
TATAAAAATAAATAAATAATAATAAAAATAAAATATTAAAAGATAAATGTTTTAATTATT
TATTTATTTATAAAATTTTTACTTTATTTATTTTTTTTATTTAGATCATCCTTTCCTTTT
AGAAAAGAAATAAAAAAAAAAAACCAAAACAAAAATAAAAATAAAAAAAAGAGATAAAAA
AAAAATAAAAATAAGAGATAAATAAAAAAAAAATGGTAGATTCATGTTGTAATACAAATG
ATACAATAAATGCAGTATTTCATCATATAAATAAACATAAAAAAGGAGATTTAAAAGAAT
GTTTATTATCAGCTATTAGAGGAXXXXXXXXXXTCGTGCTTTAATTGGTATAATACAAGG
TATGGTAAAAAGAAAAATTATACCACAATCACTTTCAACTACAACTCCAAAAGGTTTTAG
AATTTTCGCTGCTGTTACTTTAGCATTAATTTTATATTTAACAGAATATGAACCAGAGAA
TTTGAATGCATCATTCATGGGTACAATGACTGTATTATATCATAAATCTGATTCTGGTCC
AATGATTGAAAAGGGTGATCATAAATTTGGTATTCCAATGATAATAATTATTTTATCTTT
ATTTGGTGGAATCTTTCCAAAATTAAGTTTAGATTCAATGTTTTCTTATTTTAAATTGTA
ATAAAAAAAA
sequence update 1999. 1.17
Translated Amino Acid sequence
*k*innnknkilkdkcfnylfiykiftlfiffi*iilsf*krnkkkkpkqk*k*kkeikk
k*k*EINKKKMVDSCCNTNDTINAVFHHINKHKKGDLKECLLSAIRG---

---RALIGIIQGMVKRKIIPQSLSTTTPKGFRIFAAVTLALILYLTEYEPENLNASFMGT
MTVLYHKSDSGPMIEKGDHKFGIPMIIIILSLFGGIFPKLSLDSMFSYFKL**kk


Translated Amino Acid sequence (All Frames)
Frame A:
yknk*iiikiky*kinvliiylfikfllylfflfrssfpfrkeikkknqnknknkkkr*k
knknkr*ikkkw*ihvviqmiq*mqyfii*inikkei*knvyyqlle---

---scfnwyntrygkkknyttitfnynskrf*nfrccyfsinfifnri*trefeciihgy
ndciis*i*fwsnd*kg*s*iwysndnnyfifiwwnlskikfrfnvflf*ivikk

Frame B:
ikink***k*nikr*mf*lfiyl*nfyfiyffyldhpfllekk*kkktktkikikkrdkk
kikirdk*kkngrfml*yk*ynkcsissyk*t*krrfkrmfiisy*r---

---RALIGIIQGMVKRKIIPQSLSTTTPKGFRIFAAVTLALILYLTEYEPENLNASFMGT
MTVLYHKSDSGPMIEKGDHKFGIPMIIIILSLFGGIFPKLSLDSMFSYFKL**kk

Frame C:
*k*innnknkilkdkcfnylfiykiftlfiffi*iilsf*krnkkkkpkqk*k*kkeikk
k*k*EINKKKMVDSCCNTNDTINAVFHHINKHKKGDLKECLLSAIRG---

---vl*lv*ykvw*keklyhnhfqlqlqkvlefsllll*h*fyi*qnmnqri*mhhswvq
*lyyiinlilvq*lkrviinlvfq***lfylylvesfqn*v*iqcflilncnkk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSH647 (SSH647Q) /CSM/SS/SSH6-B/SSH647Q.Seq.d/ 831 0.0
VSK306 (VSK306Q) /CSM/VS/VSK3-A/VSK306Q.Seq.d/ 519 e-146
VSG891 (VSG891Q) /CSM/VS/VSG8-D/VSG891Q.Seq.d/ 40 0.042
SSE276 (SSE276Q) /CSM/SS/SSE2-D/SSE276Q.Seq.d/ 40 0.042
VSJ784 (VSJ784Q) /CSM/VS/VSJ7-D/VSJ784Q.Seq.d/ 38 0.17
VSH754 (VSH754Q) /CSM/VS/VSH7-C/VSH754Q.Seq.d/ 38 0.17
VFO139 (VFO139Q) /CSM/VF/VFO1-B/VFO139Q.Seq.d/ 38 0.17
VFL255 (VFL255Q) /CSM/VF/VFL2-C/VFL255Q.Seq.d/ 38 0.17
VFJ641 (VFJ641Q) /CSM/VF/VFJ6-B/VFJ641Q.Seq.d/ 38 0.17
VFI458 (VFI458Q) /CSM/VF/VFI4-C/VFI458Q.Seq.d/ 38 0.17

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AE014818|AE014818.1 Plasmodium falciparum 3D7 chromosome 14 section 3 of 13 of the complete sequence. 34 5e-07 14
AE014827|AE014827.1 Plasmodium falciparum 3D7 chromosome 14 section 12 of 13 of the complete sequence. 38 1e-06 14
AL844509|AL844509.1 Plasmodium falciparum chromosome 13. 36 2e-06 22
AL031745|AL031745.8 Plasmodium falciparum DNA from MAL1P2. 34 5e-06 17
AE014823|AE014823.1 Plasmodium falciparum 3D7 chromosome 14 section 8 of 13 of the complete sequence. 32 5e-05 11
AE014831|AE014831.1 Plasmodium falciparum 3D7 chromosome 10 section 3 of 7 of the complete sequence. 32 1e-04 15
AL034557|AL034557.8 Plasmodium falciparum MAL4P1. 32 1e-04 13
AF288092|AF288092.1 Naegleria gruberi mitochondrial DNA, complete genome. 34 2e-04 8
AL844505|AL844505.1 Plasmodium falciparum chromosome 6. 40 2e-04 20
AL929357|AL929357.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 3/5. 32 3e-04 15
dna update 2004. 2.14
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

BX511039_2(BX511039|pid:none) Ustilago maydis p-locus on chromos... 34 4.4

protein update 2009. 1.31
PSORT

psg: 0.63 gvh: 0.49 alm: 0.22 top: 0.20 tms: 0.13 mit: 0.16 mip: 0.00
nuc: 0.02 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 1.00 m3b: 0.00 m_ : 0.00

36.0 %: endoplasmic reticulum
16.0 %: plasma membrane
12.0 %: mitochondrial
8.0 %: extracellular, including cell wall
8.0 %: nuclear
4.0 %: cytoskeletal
4.0 %: Golgi
4.0 %: peroxisomal
4.0 %: cytoplasmic
4.0 %: vesicles of secretory system

>> prediction for SSH647 is end

5' end seq. ID SSH647F
5' end seq.
>SSH647F.Seq
TATAAAAATAAATAAATAATAATAAAAATAAAATATTAAAAGATAAATGTTTTAATTATT
TATTTATTTATAAAATTTTTACTTTATTTATTTTTTTTATTTAGATCATCCTTTCCTTTT
AGAAAAGAAATAAAAAAAAAAAACCAAAACAAAAATAAAAATAAAAAAAAGAGATAAAAA
AAAAATAAAAATAAGAGATAAATAAAAAAAAAATGGTAGATTCATGTTGTAATACAAATG
ATACAATAAATGCAGTATTTCATCATATAAATAAACATAAAAAAGGAGATTTAAAAGAAT
GTTTATTATCAGCTATTAGAGGA----------
Length of 5' end seq. 323
3' end seq. ID SSH647Z
3' end seq.
>SSH647Z.Seq
----------TCGTGCTTTAATTGGTATAATACAAGGTATGGTAAAAAGAAAAATTATAC
CACAATCACTTTCAACTACAACTCCAAAAGGTTTTAGAATTTTCGCTGCTGTTACTTTAG
CATTAATTTTATATTTAACAGAATATGAACCAGAGAATTTGAATGCATCATTCATGGGTA
CAATGACTGTATTATATCATAAATCTGATTCTGGTCCAATGATTGAAAAGGGTGATCATA
AATTTGGTATTCCAATGATAATAATTATTTTATCTTTATTTGGTGGAATCTTTCCAAAAT
TAAGTTTAGATTCAATGTTTTCTTATTTTAAATTGTAATAAAAAAAA
Length of 3' end seq. 337
Connected seq. ID SSH647P
Connected seq.
>SSH647P.Seq
TATAAAAATAAATAAATAATAATAAAAATAAAATATTAAAAGATAAATGTTTTAATTATT
TATTTATTTATAAAATTTTTACTTTATTTATTTTTTTTATTTAGATCATCCTTTCCTTTT
AGAAAAGAAATAAAAAAAAAAAACCAAAACAAAAATAAAAATAAAAAAAAGAGATAAAAA
AAAAATAAAAATAAGAGATAAATAAAAAAAAAATGGTAGATTCATGTTGTAATACAAATG
ATACAATAAATGCAGTATTTCATCATATAAATAAACATAAAAAAGGAGATTTAAAAGAAT
GTTTATTATCAGCTATTAGAGGA----------TCGTGCTTTAATTGGTATAATACAAGG
TATGGTAAAAAGAAAAATTATACCACAATCACTTTCAACTACAACTCCAAAAGGTTTTAG
AATTTTCGCTGCTGTTACTTTAGCATTAATTTTATATTTAACAGAATATGAACCAGAGAA
TTTGAATGCATCATTCATGGGTACAATGACTGTATTATATCATAAATCTGATTCTGGTCC
AATGATTGAAAAGGGTGATCATAAATTTGGTATTCCAATGATAATAATTATTTTATCTTT
ATTTGGTGGAATCTTTCCAAAATTAAGTTTAGATTCAATGTTTTCTTATTTTAAATTGTA
ATAAAAAAAA
Length of connected seq. 660
Full length Seq ID -
Full length Seq. -
Length of full length seq. -