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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSH632
Library SS
(Link to library)
Clone ID SSH632
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U02936-1
Original site URL
Representative seq. ID SSH632E
(Link to Original site)
Representative DNA sequence 
>SSH632 (SSH632Q) /CSM/SS/SSH6-B/SSH632Q.Seq.d/
CATTATTTTATATATATAAACACATATATAAATAATATGGGTAAGCGTAAATCAAGTAAG
CCACCCCCAAAAAAGGTAGTTCAAAAACTCCCAAAGCATTTTGATTGCTTATTTTGTGAC
CATTCTCAGTCTGTAGATTGTATATTAGATAGAGAACTTGGTAAAGGAGTTGCCAAGTGC
AGAGTTTGTAATGCCTCATATGAAACACCAATTCATGAGTTATCAGATGCCATAGACGTT
TATAGTGATTGGATTGATGCTTGTGAATCAATTAGATAATTTCAATACAATTTGATGATA
TCACCTAACTTTAACATTACAAAAATAAAAATAAAAAATAAAAAAAAAAAAAACCTATTT
GTACATAAATAAAAAA
sequence update 1998. 4.23
Translated Amino Acid sequence 
HYFIYINTYINNMGKRKSSKPPPKKVVQKLPKHFDCLFCDHSQSVDCILDRELGKGVAKC
RVCNASYETPIHELSDAIDVYSDWIDACESIR*fqynlmispnfnitkikiknkkkknlf
vhk*k
Translated Amino Acid sequence (All Frames) 
Frame A:
HYFIYINTYINNMGKRKSSKPPPKKVVQKLPKHFDCLFCDHSQSVDCILDRELGKGVAKC
RVCNASYETPIHELSDAIDVYSDWIDACESIR*fqynlmispnfnitkikiknkkkknlf
vhk*k


Frame B:
iilyi*thi*iiwvsvnqvshpqkr*fknsqsiliayfvtilsl*ivy*ienlvkelpsa
efvmphmkhqfmsyqmp*tfiviglmlvnqldnfnti**yhltltlqk*k*kikkkktyl
yinkk


Frame C:
lfyiykhiyk*yg*a*ik*atpkkgssktpkaf*llil*pfsvcrlyir*rtw*rscqvq
sl*cli*ntns*virchrrl**ld*cl*in*iisiqfddit*l*hyknknkk*kkkkpic
t*ik
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSH632 (SSH632Q) /CSM/SS/SSH6-B/SSH632Q.Seq.d/                        559   e-158
AFK752 (AFK752Q) /CSM/AF/AFK7-C/AFK752Q.Seq.d/                        559   e-158
VFA226 (VFA226Q) /CSM/VF/VFA2-B/VFA226Q.Seq.d/                         40   0.023
SFJ610 (SFJ610Q) /CSM/SF/SFJ6-A/SFJ610Q.Seq.d/                         40   0.023
SFF696 (SFF696Q) /CSM/SF/SFF6-D/SFF696Q.Seq.d/                         40   0.023
SFE201 (SFE201Q) /CSM/SF/SFE2-A/SFE201Q.Seq.d/                         40   0.023
CFK414 (CFK414Q) /CSM/CF/CFK4-A/CFK414Q.Seq.d/                         40   0.023
CFI768 (CFI768Q) /CSM/CF/CFI7-C/CFI768Q.Seq.d/                         40   0.023
CFA788 (CFA788Q) /CSM/CF/CFA7-D/CFA788Q.Seq.d/                         40   0.023
AFJ814 (AFJ814Q) /CSM/AF/AFJ8-A/AFJ814Q.Seq.d/                         40   0.023
own update 2001.11.27
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AV670623|AV670623.1 Oryzias latipes cDNA clone:OLb25.06g, similar to hypothetical protein Y54G11A.11 (Caenorhabditis elegans).    50  0.019  1
BJ502772|BJ502772.1 Oryzias latipes cDNA clone:MF01FSA001I05, 3' end single read.    50  0.019  1
BJ502484|BJ502484.1 Oryzias latipes cDNA clone:MF01FSA001I05, 5' end single read.    50  0.019  1
CA912998|CA912998.1 PCSC09493 Scarlet Runner Bean Suspensor Region TriplEx2 Phaseolus coccineus cDNA 5' similar to Unknown protein (NM_123971), mRNA sequence.    48  0.076  1
CB271359|CB271359.1 taa21h10.x2 Hydra EST -II Hydra magnipapillata cDNA 3' similar to TR:Q9XVZ8 Q9XVZ8 Y54G11A.11 PROTEIN. [1] ;, mRNA sequence.    46  0.30  1
CB073912|CB073912.1 taa21h10.y1 Hydra EST -II Hydra magnipapillata cDNA 5' similar to TR:Q9XVZ8 Q9XVZ8 Y54G11A.11 PROTEIN. [1] ;, mRNA sequence.    46  0.30  1
BX294152|BX294152.1 Pirellula sp. strain 1 complete genome; segment 20/24.    46  0.30  1
BX005011|BX005011.6 Zebrafish DNA sequence from clone CH211-59F19 in linkage group 23.    36  0.81  3
CB483928|CB483928.1 ccluwtbl001019 Coregonus clupeaformis head Coregonus clupeaformis cDNA, mRNA sequence.    44  1.2  1
BW078398|BW078398.1 Ciona intestinalis cDNA, clone:rcieg075l14, 3' end, single read.    44  1.2  1
dna update 2003. 7.28
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FJ422212_1(FJ422212|pid:none) Physarum polycephalum ELF-1-like p...    85   9e-16
CR382137_823(CR382137|pid:none) Debaryomyces hansenii strain CBS...    79   6e-14
CP000500_487(CP000500|pid:none) Pichia stipitis CBS 6054 chromos...    78   1e-13
FM992695_522(FM992695|pid:none) Candida dubliniensis CD36 chromo...    75   5e-13
BT081518_1(BT081518|pid:none) Rana catesbeiana clone rcat-evr-52...    73   3e-12
AM920435_45(AM920435|pid:none) Penicillium chrysogenum Wisconsin...    73   3e-12
(P36053) RecName: Full=Transcription elongation factor 1;  &AY55...    73   4e-12
BT081619_1(BT081619|pid:none) Rana catesbeiana clone rcat-evr-52...    73   4e-12
BT081768_1(BT081768|pid:none) Rana catesbeiana clone rcat-evr-51...    73   4e-12
AM270393_37(AM270393|pid:none) Aspergillus niger contig An17c011...    72   5e-12
protein update 2009. 7. 7
PSORT 

 psg: 0.84  gvh: 0.41  alm: 0.53  top: 0.53  tms: 0.00  mit: 0.30  mip: 0.04
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.33  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 32.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  8.0 %: vacuolar
	  8.0 %: mitochondrial

>> prediction for SSH632 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SSH632E
Full length Seq. 
>SSH632E.Seq
CATTATTTTATATATATAAACACATATATAAATAATATGGGTAAGCGTAAATCAAGTAAG
CCACCCCCAAAAAAGGTAGTTCAAAAACTCCCAAAGCATTTTGATTGCTTATTTTGTGAC
CATTCTCAGTCTGTAGATTGTATATTAGATAGAGAACTTGGTAAAGGAGTTGCCAAGTGC
AGAGTTTGTAATGCCTCATATGAAACACCAATTCATGAGTTATCAGATGCCATAGACGTT
TATAGTGATTGGATTGATGCTTGTGAATCAATTAGATAATTTCAATACAATTTGATGATA
TCACCTAACTTTAACATTACAAAAATAAAAATAAAAAATAAAAAAAAAAAAAACCTATTT
GTACATAAATAAAAAA
Length of full length seq. 376