SSH623
Library SS
(Link to library)
Clone ID SSH623
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U11902-1|Contig-U13418-1
Original site URL
Representative seq. ID SSH623P
(Link to Original site)
Representative DNA sequence
>SSH623 (SSH623Q) /CSM/SS/SSH6-A/SSH623Q.Seq.d/
TAAAAATCAAAAAAATAAAATTTTACCAAATACATTTTCACCAAATCTACAACCTCAACA
ACCATTGTCATCATCTTCATCAACAATAAATACACCATCATCACCAAATCAATTAAATTC
ACCCTCAATNGAGGATCAAATGGAGGAATATAAAAAAATTCATAGAGATAAATATAAXXX
XXXXXXXTTGATTTTCGGCCANGGTATNCCATCCCAAACTTGCTGATAAAATAGCATGTT
GGGGTGAAAGTTTTGAGCAGGAGGGTGTAAAAGGTGGTCAAACACCAATTAATTTNCCTT
TAAATGATAAATTTGTTTACTCTCCTCACTGCTATGGTCCGTCCGTTGTCAACCATCCAC
ATTTCAATCATAAAGATTATCCACACAATTTAAAACCTCATTGGGATCAAAATTTTGGTA
ATTTAGCAACAAATACTAAAAGAGGTNTAGTAATTGGTGAATGGGGTGGAAAATATATAA
CTCCAATGGATCAATTATGGATGGATACTTTTGTTGATTACTTAATTTCAAAAGGTACAA
CAGATAGTTTTTATTGGTGTTTAAATCCAAATAGTGGTGATACTGGTGGTTTATATTTAG
ATGATTGGGTATCTACAAATCTTCCAAAATTGAATTTATTAAATAAATTATGTCCTCATC
CCACAAAAATTAAATTGGATAAAGATACAATGATATATAAAATAACATCAGTTGTAACAG
CAACGTNTGAAGCATAAATAAAATTAAATAAAATAAAACCAATAATTTTATTACAAATAT
AAAAAAAAAAAAAAAAAA
sequence update 1999. 1.17
Translated Amino Acid sequence
KNQKNKILPNTFSPNLQPQQPLSSSSSTINTPSSPNQLNSPSXEDQMEEYKKIHRDKY--
-

---DFRPXYXIPNLLIK*hvgvkvlsrrv*kvvkhqlixl*minlftlltamvrplstih
isiikiihti*nligikilvi*qqilkev**lvngveni*lqwinygwilllit*fqkvq
qivfigv*iqivvilvvyi*migylqifqn*iy*inyvlipqklnwikiq*yik*hql*q
qrxkhk*n*ik*nq*fyykykkkkkk


Translated Amino Acid sequence (All Frames)
Frame A:
*kskk*nftkyiftksttsttiviifinnkytiitksikftlnxgsnggi*kns*r*i*-
--

---lifgxgxpsqtc**nsmlg*kf*aggckrwsntn*fxfk**icllssllwsvrcqps
tfqs*rlstqfktslgskfw*fsnky*krxsnw*mgwkiynsngsimdgyfc*llnfkry
nr*fllvfksk*w*ywwfifr*lgiyksskiefik*imssshkn*ig*ryndi*nniscn
snv*sinkik*nktnnfitnikkkkk

Frame B:
KNQKNKILPNTFSPNLQPQQPLSSSSSTINTPSSPNQLNSPSXEDQMEEYKKIHRDKY--
-

---*fsaxvxhpkladkiacwgesfeqegvkggqtpinxplndkfvysphcygpsvvnhp
hfnhkdyphnlkphwdqnfgnlatntkrgxvigewggkyitpmdqlwmdtfvdyliskgt
tdsfywclnpnsgdtgglylddwvstnlpklnllnklcphptkikldkdtmiykitsvvt
atxea*iklnkikpiillqi*kkkkk

Frame C:
kikkikfyqihfhqiynlnnhchhlhqq*ihhhhqin*ihpqxrikwrnikkfieini--
-

---DFRPXYXIPNLLIK*hvgvkvlsrrv*kvvkhqlixl*minlftlltamvrplstih
isiikiihti*nligikilvi*qqilkev**lvngveni*lqwinygwilllit*fqkvq
qivfigv*iqivvilvvyi*migylqifqn*iy*inyvlipqklnwikiq*yik*hql*q
qrxkhk*n*ik*nq*fyykykkkkkk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSH623 (SSH623Q) /CSM/SS/SSH6-A/SSH623Q.Seq.d/ 1277 0.0
SHK824 (SHK824Q) /CSM/SH/SHK8-A/SHK824Q.Seq.d/ 1029 0.0
SFJ143 (SFJ143Q) /CSM/SF/SFJ1-B/SFJ143Q.Seq.d/ 1029 0.0
SFK555 (SFK555Q) /CSM/SF/SFK5-C/SFK555Q.Seq.d/ 1021 0.0
CHB579 (CHB579Q) /CSM/CH/CHB5-D/CHB579Q.Seq.d/ 1021 0.0
CFB810 (CFB810Q) /CSM/CF/CFB8-A/CFB810Q.Seq.d/ 961 0.0
CFB819 (CFB819Q) /CSM/CF/CFB8-A/CFB819Q.Seq.d/ 944 0.0
CHP352 (CHP352Q) /CSM/CH/CHP3-C/CHP352Q.Seq.d/ 902 0.0
SFK607 (SFK607Q) /CSM/SF/SFK6-A/SFK607Q.Seq.d/ 220 3e-56
SSJ156 (SSJ156Q) /CSM/SS/SSJ1-C/SSJ156Q.Seq.d/ 42 0.013

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC000383|AC000383.2 Homo sapiens chromosome 11 clone pDJ227b23, *** SEQUENCING IN PROGRESS ***, 19 unordered pieces. 36 0.13 4
AC115612|AC115612.2 Dictyostelium discoideum chromosome 2 map 6245135-6357017 strain AX4, complete sequence. 36 0.18 8
AC117075|AC117075.2 Dictyostelium discoideum chromosome 2 map 5201047-5455781 strain AX4, complete sequence. 32 0.45 11
AC117076|AC117076.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence. 32 0.81 8
AX348725|AX348725.1 Sequence 183 from Patent WO0202807. 40 1.1 3
AX344318|AX344318.1 Sequence 165 from Patent WO0200926. 40 1.1 3
AX251922|AX251922.1 Sequence 183 from Patent WO0168911. 40 1.1 3
AE014818|AE014818.1 Plasmodium falciparum 3D7 chromosome 14 section 3 of 13 of the complete sequence. 34 1.4 8
AC073493|AC073493.27 Homo sapiens Xp BAC RP11-631N21 (Roswell Park Cancer Institute Human BAC Library) complete sequence. 34 1.6 9
AX345156|AX345156.1 Sequence 227 from Patent WO0200928. 30 1.7 5
dna update 2003. 7.28
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AJ248285_306(AJ248285|pid:none) Pyrococcus abyssi complete genom... 119 8e-26
AE008923_609(AE008923|pid:none) Xanthomonas axonopodis pv. citri... 109 9e-23
AJ304415_1(AJ304415|pid:none) Xanthomonas campestris pv. campest... 106 1e-21
(P19487) RecName: Full=Major extracellular endoglucanase; ... 106 1e-21
BA000001_1206(BA000001|pid:none) Pyrococcus horikoshii OT3 DNA, ... 106 1e-21
AE013598_3926(AE013598|pid:none) Xanthomonas oryzae pv. oryzae K... 103 5e-21
AY627914_1(AY627914|pid:none) Xanthomonas oryzae pv. oryzae cell... 103 6e-21
CP000512_2065(CP000512|pid:none) Acidovorax citrulli AAC00-1, co... 101 2e-20
AM711867_2471(AM711867|pid:none) Clavibacter michiganensis subsp... 99 2e-19
AM711865_20(AM711865|pid:none) Clavibacter michiganensis subsp. ... 99 2e-19
protein update 2009. 6.13
PSORT

psg: 0.86 gvh: 0.42 alm: 0.67 top: 0.23 tms: 0.00 mit: 0.46 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.33 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: nuclear
32.0 %: cytoplasmic
20.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: vesicles of secretory system

>> prediction for SSH623 is nuc

5' end seq. ID SSH623F
5' end seq.
>SSH623F.Seq
TAAAAATCAAAAAAATAAAATTTTACCAAATACATTTTCACCAAATCTACAACCTCAACA
ACCATTGTCATCATCTTCATCAACAATAAATACACCATCATCACCAAATCAATTAAATTC
ACCCTCAATNGAGGATCAAATGGAGGAATATAAAAAAATTCATAGAGATAAATATAA---
-------
Length of 5' end seq. 177
3' end seq. ID SSH623Z
3' end seq.
>SSH623Z.Seq
----------TTGATTTTCGGCCANGGTATNCCATCCCAAACTTGCTGATAAAATAGCAT
GTTGGGGTGAAAGTTTTGAGCAGGAGGGTGTAAAAGGTGGTCAAACACCAATTAATTTNC
CTTTAAATGATAAATTTGTTTACTCTCCTCACTGCTATGGTCCGTCCGTTGTCAACCATC
CACATTTCAATCATAAAGATTATCCACACAATTTAAAACCTCATTGGGATCAAAATTTTG
GTAATTTAGCAACAAATACTAAAAGAGGTNTAGTAATTGGTGAATGGGGTGGAAAATATA
TAACTCCAATGGATCAATTATGGATGGATACTTTTGTTGATTACTTAATTTCAAAAGGTA
CAACAGATAGTTTTTATTGGTGTTTAAATCCAAATAGTGGTGATACTGGTGGTTTATATT
TAGATGATTGGGTATCTACAAATCTTCCAAAATTGAATTTATTAAATAAATTATGTCCTC
ATCCCACAAAAATTAAATTGGATAAAGATACAATGATATATAAAATAACATCAGTTGTAA
CAGCAACGTNTGAAGCATAAATAAAATTAAATAAAATAAAACCAATAATTTTATTACAAA
TATAAAAAAAAAAAAAAAAAA
Length of 3' end seq. 611
Connected seq. ID SSH623P
Connected seq.
>SSH623P.Seq
TAAAAATCAAAAAAATAAAATTTTACCAAATACATTTTCACCAAATCTACAACCTCAACA
ACCATTGTCATCATCTTCATCAACAATAAATACACCATCATCACCAAATCAATTAAATTC
ACCCTCAATNGAGGATCAAATGGAGGAATATAAAAAAATTCATAGAGATAAATATAA---
-------TTGATTTTCGGCCANGGTATNCCATCCCAAACTTGCTGATAAAATAGCATGTT
GGGGTGAAAGTTTTGAGCAGGAGGGTGTAAAAGGTGGTCAAACACCAATTAATTTNCCTT
TAAATGATAAATTTGTTTACTCTCCTCACTGCTATGGTCCGTCCGTTGTCAACCATCCAC
ATTTCAATCATAAAGATTATCCACACAATTTAAAACCTCATTGGGATCAAAATTTTGGTA
ATTTAGCAACAAATACTAAAAGAGGTNTAGTAATTGGTGAATGGGGTGGAAAATATATAA
CTCCAATGGATCAATTATGGATGGATACTTTTGTTGATTACTTAATTTCAAAAGGTACAA
CAGATAGTTTTTATTGGTGTTTAAATCCAAATAGTGGTGATACTGGTGGTTTATATTTAG
ATGATTGGGTATCTACAAATCTTCCAAAATTGAATTTATTAAATAAATTATGTCCTCATC
CCACAAAAATTAAATTGGATAAAGATACAATGATATATAAAATAACATCAGTTGTAACAG
CAACGTNTGAAGCATAAATAAAATTAAATAAAATAAAACCAATAATTTTATTACAAATAT
AAAAAAAAAAAAAAAAAA
Length of connected seq. 788
Full length Seq ID -
Full length Seq. -
Length of full length seq. -