>SSH619 (SSH619Q) /CSM/SS/SSH6-A/SSH619Q.Seq.d/
XXXXXXXXXXATTCATTCTATACTCAAATCCAACACCCAACAACTCCATGAGATGTCTGC
TTGGTTTAGATCAATTGATAAAGACAGAAGTGGTTCAATTTCAGCAATGGAATTACAACA
TTTACATGTTGGTTATGGCCCATTAGGTATTGAAACAGCTACAAAATTAATTAGAGTATT
TGATGTTGATAAGAGTGGTCAAATTGATTTTTATGAATATGCTGCATTGCATCAATTTAT
TAATATTTTATATGCCAACTTTTTAGCCAATGACCGTAATCGTAGTGGTACAATTGACGC
TCAAGAAATTCACAGAGCATTAGGTACATCTGGATTTAATCTTCCATTTAACACTGTTAA
TTTACTTTTCTTAAAAGCCTCACCACGTGGTTATGGTTTAAAGTTCAGCGACTTCCTTGG
ATTATGCGCATCCATTGCCATCGCCAGATCATTATTTGAAGCTCATGATAGAATGAGAAC
TGGTGTTGCTCATTTGAATGTTAATCACATTTATGATATTATTAGCTTAGTTTAAATTAA
ACTTTTTATAATTGTATTTGATAATTTCTCTATTAAAAATAAAAATTAAACAAATATTAA
TTTGTATTGTAAACCATAAAA

---HSILKSNTQQLHEMSAWFRSIDKDRSGSISAMELQHLHVGYGPLGIETATKLIRVFD
VDKSGQIDFYEYAALHQFINILYANFLANDRNRSGTIDAQEIHRALGTSGFNLPFNTVNL
LFLKASPRGYGLKFSDFLGLCASIAIARSLFEAHDRMRTGVAHLNVNHIYDIISLV*ikl
fiivfdnfsiknkn*tninlyckp*

Frame A:
---filysnptpnnsmrcllgldqliktevvqfqqwnyniymlvmah*vlkqlqn*leyl
mlirvvklifmnmlhcinllifymptf*pmtvivvvqltlkkfteh*vhldlifhltlli
yfs*kphhvvmv*ssatsldyahplpspdhylklmie*elvlli*mlitfmilla*fkln
fl*lyliisllkikikqilicivnhk


Frame B:
---sfytqiqhpttp*dvclv*in**rqkwfnfsngittftcwlwpiry*nsykin*si*
c**ewsn*fl*icciasiy*yficqlfsq*p*s*wyn*rsrnsqsiryiwi*ssi*hc*f
tflkslttwlwfkvqrlpwimrihchrqiii*ss**nenwccsfec*shl*yy*lsln*t
fynci**fly*k*klnky*fvl*tik


Frame C:
---HSILKSNTQQLHEMSAWFRSIDKDRSGSISAMELQHLHVGYGPLGIETATKLIRVFD
VDKSGQIDFYEYAALHQFINILYANFLANDRNRSGTIDAQEIHRALGTSGFNLPFNTVNL
LFLKASPRGYGLKFSDFLGLCASIAIARSLFEAHDRMRTGVAHLNVNHIYDIISLV*ikl
fiivfdnfsiknkn*tninlyckp*

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSH619 (SSH619Q) /CSM/SS/SSH6-A/SSH619Q.Seq.d/                       1211   0.0
SSG731 (SSG731Q) /CSM/SS/SSG7-B/SSG731Q.Seq.d/                       1195   0.0
SSG263 (SSG263Q) /CSM/SS/SSG2-C/SSG263Q.Seq.d/                       1189   0.0
SSG888 (SSG888Q) /CSM/SS/SSG8-D/SSG888Q.Seq.d/                       1150   0.0
SSA625 (SSA625Q) /CSM/SS/SSA6-B/SSA625Q.Seq.d/                       1074   0.0
VSD549 (VSD549Q) /CSM/VS/VSD5-C/VSD549Q.Seq.d/                       1013   0.0
SSI168 (SSI168Q) /CSM/SS/SSI1-C/SSI168Q.Seq.d/                        791   0.0
SSH795 (SSH795Q) /CSM/SS/SSH7-D/SSH795Q.Seq.d/                        640   0.0
SSJ228 (SSJ228Q) /CSM/SS/SSJ2-B/SSJ228Q.Seq.d/                        595   e-169
SSB189 (SSB189Q) /CSM/SS/SSB1-D/SSB189Q.Seq.d/                        337   1e-91

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AF358911|AF358911.1 Dictyostelium discoideum apoptosis-linked gene 2 (alg2A) mRNA, complete cds.  1160  0.0  2
AB056713|AB056713.1 Dictyostelium discoideum DdPEF-1 mRNA for penta-EF-hand Ca2+-binding protein, complete cds.  1039  0.0  2
AF358913|AF358913.1 Dictyostelium discoideum apoptosis-linked gene 2 (alg2A) gene, complete cds.   494  0.0  4
AY044085|AY044085.1 Dictyostelium discoideum Rho GDP-dissociation inhibitor (rdiA) gene, complete cds; and calcium-binding-like protein gene, partial cds.   622  e-174  1
AF358912|AF358912.1 Dictyostelium discoideum apoptosis-linked gene 2 (alg2B) mRNA, complete cds.    96  5e-18  2
AB056714|AB056714.1 Dictyostelium discoideum DdPEF-2 mRNA for penta-EF-hand Ca2+-binding protein, complete cds.    96  6e-18  2
AF358914|AF358914.1 Dictyostelium discoideum apoptosis-linked gene 2 (alg2B) gene, complete cds.    60  5e-10  3
AC027267|AC027267.3 Homo sapiens chromosome 15 clone RP11-228G18 map 15, WORKING DRAFT SEQUENCE, 43 unordered pieces.    46  0.007  2
AC133633|AC133633.5 Homo sapiens chromosome 8, clone CTD-2517C5, complete sequence.    40  0.011  6
AC119429|AC119429.3 Homo sapiens chromosome 1 clone RP4-723P6, complete sequence.    40  0.011  4

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q95YL4) RecName: Full=Penta-EF hand domain-containing protein 2...   226   3e-58
AY044085_2(AY044085|pid:none) Dictyostelium discoideum Rho GDP-d...   152   6e-36
AF291721_1(AF291721|pid:none) Entamoeba histolytica URE3-BP sequ...    91   3e-17
CT005252_146(CT005252|pid:none) Leishmania major strain Friedlin...    87   5e-16
AE013599_1152(AE013599|pid:none) Drosophila melanogaster chromos...    85   2e-15
AF082530_1(AF082530|pid:none) Entamoeba histolytica Grainin 2 (g...    83   5e-15
(Q9UBV8) RecName: Full=Peflin; AltName: Full=PEF protein with a ...    81   2e-14
EF210317_1(EF210317|pid:none) Bombyx mori apoptosis-linked prote...    81   2e-14
(Q5PQ53) RecName: Full=Peflin; AltName: Full=PEF protein with a ...    81   2e-14
BC170841_1(BC170841|pid:none) Xenopus tropicalis sorcin, mRNA (c...    81   3e-14

 psg: 0.55  gvh: 0.37  alm: 0.37  top: 0.53  tms: 0.00  mit: 0.29  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 32.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  8.0 %: vesicles of secretory system
	  4.0 %: cytoskeletal

>> prediction for SSH619 is nuc

>SSH619Z.Seq
----------ATTCATTCTATACTCAAATCCAACACCCAACAACTCCATGAGATGTCTGC
TTGGTTTAGATCAATTGATAAAGACAGAAGTGGTTCAATTTCAGCAATGGAATTACAACA
TTTACATGTTGGTTATGGCCCATTAGGTATTGAAACAGCTACAAAATTAATTAGAGTATT
TGATGTTGATAAGAGTGGTCAAATTGATTTTTATGAATATGCTGCATTGCATCAATTTAT
TAATATTTTATATGCCAACTTTTTAGCCAATGACCGTAATCGTAGTGGTACAATTGACGC
TCAAGAAATTCACAGAGCATTAGGTACATCTGGATTTAATCTTCCATTTAACACTGTTAA
TTTACTTTTCTTAAAAGCCTCACCACGTGGTTATGGTTTAAAGTTCAGCGACTTCCTTGG
ATTATGCGCATCCATTGCCATCGCCAGATCATTATTTGAAGCTCATGATAGAATGAGAAC
TGGTGTTGCTCATTTGAATGTTAATCACATTTATGATATTATTAGCTTAGTTTAAATTAA
ACTTTTTATAATTGTATTTGATAATTTCTCTATTAAAAATAAAAATTAAACAAATATTAA
TTTGTATTGTAAACCATAAAA