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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSH618
Library SS
(Link to library)
Clone ID SSH618
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15932-1
Original site URL
Representative seq. ID SSH618Z
(Link to Original site)
Representative DNA sequence 
>SSH618 (SSH618Q) /CSM/SS/SSH6-A/SSH618Q.Seq.d/
XXXXXXXXXXTGAACAACAACAACAAGAAAAANTAAATAACAACACAAGTAATAATTCAA
ATAATTATCAATTACCACCATTACCAGTAGTTGAACAAGAACAAATTATTGAAAATGTTC
AACCACAAGTTGAAGAATTACCAAAACTTGAAGAATTATCAGTAAATGGTGAACAAGAAG
ATATTAGACGTAAATGTATTGGTACATTGGTTTCAATGGGTTTCAGTAATACTCCAAATA
TTATTGAAATTATCAAAAGATATAATTTCAATATCAATGAAATCATTGACCATTTATTAA
GTAATCAAGAACAATAAAAAAGATCTTAGAAAATCTTTTTCTTTTTTTTTTTGTTTAAAA
AAAAAAAAAAAAAAAAAAAAA
sequence update 1998. 4.23
Translated Amino Acid sequence 
---EQQQQEKXNNNTSNNSNNYQLPPLPVVEQEQIIENVQPQVEELPKLEELSVNGEQED
IRRKCIGTLVSMGFSNTPNIIEIIKRYNFNINEIIDHLLSNQEQ*krs*kiffffflfkk
kkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
---EQQQQEKXNNNTSNNSNNYQLPPLPVVEQEQIIENVQPQVEELPKLEELSVNGEQED
IRRKCIGTLVSMGFSNTPNIIEIIKRYNFNINEIIDHLLSNQEQ*krs*kiffffflfkk
kkkkkk


Frame B:
---nnnnkkx*ittqviiqiiinyhhyq*lnknkllkmfnhklknyqnlknyq*mvnkki
ldvnvlvhwfqwvsvilqillklskdiisismksltiy*viknnkkdlrksfsfffclkk
kkkkkk


Frame C:
---ttttrkxk*qhk**fk*lsittitss*trtny*kcstts*ritkt*riiskw*trry
*t*mywyigfngfq*yskyy*nyqki*fqyq*nh*pfik*srtikkilenlflfffv*kk
kkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM404 (SSM404Q) /CSM/SS/SSM4-A/SSM404Q.Seq.d/                        638   0.0
SSM351 (SSM351Q) /CSM/SS/SSM3-C/SSM351Q.Seq.d/                        638   0.0
SSM280 (SSM280Q) /CSM/SS/SSM2-D/SSM280Q.Seq.d/                        638   0.0
SSK110 (SSK110Q) /CSM/SS/SSK1-A/SSK110Q.Seq.d/                        638   0.0
SSI103 (SSI103Q) /CSM/SS/SSI1-A/SSI103Q.Seq.d/                        638   0.0
SSH618 (SSH618Q) /CSM/SS/SSH6-A/SSH618Q.Seq.d/                        638   0.0
SSH104 (SSH104Q) /CSM/SS/SSH1-A/SSH104Q.Seq.d/                        638   0.0
SSE569 (SSE569Q) /CSM/SS/SSE5-C/SSE569Q.Seq.d/                        638   0.0
SSA184 (SSA184Q) /CSM/SS/SSA1-D/SSA184Q.Seq.d/                        638   0.0
SLA424 (SLA424Q) /CSM/SL/SLA4-A/SLA424Q.Seq.d/                        638   0.0
own update 2003. 6.15
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC117076|AC117076.2 Dictyostelium discoideum chromosome 2 map 5862124-6045772 strain AX4, complete sequence.    34  4e-05  7
AC116977|AC116977.2 Dictyostelium discoideum chromosome 2 map 5515173-5817331 strain AX4, complete sequence.    38  5e-04  5
AL929355|AL929355.1 Plasmodium falciparum strain 3D7, chromosome 9; segment 1/5.    40  0.010  10
AC117072|AC117072.2 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence.    40  0.011  4
AC116984|AC116984.2 Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4, complete sequence.    40  0.026  4
AC091608|AC091608.2 Homo sapiens chromosome 1 clone RP11-97O14, complete sequence.    38  0.060  6
AC116986|AC116986.2 Dictyostelium discoideum chromosome 2 map 2234041-2567370 strain AX4, complete sequence.    36  0.086  4
AC116305|AC116305.2 Dictyostelium discoideum chromosome 2 map 1005175-1418323 strain AX4, complete sequence.    40  0.087  5
AC115609|AC115609.1 Dictyostelium discoideum chromosome 2 map 4874582-4895202 strain AX4, *** SEQUENCING IN PROGRESS ***, in ordered pieces.    34  0.11  4
AL845265|AL845265.20 Mouse DNA sequence from clone RP23-158O8 on chromosome 2.    48  0.13  5
dna update 2003. 7.28
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU016667_18(EU016667|pid:none) Uncultured marine microorganism H...    34   1.8
AC116982_8(AC116982|pid:none) Dictyostelium discoideum chromosom...    33   2.4
CP000393_3125(CP000393|pid:none) Trichodesmium erythraeum IMS101...    33   4.0
AM295250_415(AM295250|pid:none) Staphylococcus carnosus subsp. c...    32   5.3
BT066423_1(BT066423|pid:none) Zea mays full-length cDNA clone ZM...    32   5.3
AE014187_207(AE014187|pid:none) Plasmodium falciparum 3D7 chromo...    32   5.3
AP008981_438(AP008981|pid:none) Orientia tsutsugamushi str. Iked...    32   9.0
protein update 2009. 6.12
PSORT 

 psg: 0.75  gvh: 0.31  alm: 0.45  top: 0.53  tms: 0.00  mit: 0.14  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 36.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for SSH618 is cyt
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSH618Z
3' end seq. 
>SSH618Z.Seq
----------TGAACAACAACAACAAGAAAAANTAAATAACAACACAAGTAATAATTCAA
ATAATTATCAATTACCACCATTACCAGTAGTTGAACAAGAACAAATTATTGAAAATGTTC
AACCACAAGTTGAAGAATTACCAAAACTTGAAGAATTATCAGTAAATGGTGAACAAGAAG
ATATTAGACGTAAATGTATTGGTACATTGGTTTCAATGGGTTTCAGTAATACTCCAAATA
TTATTGAAATTATCAAAAGATATAATTTCAATATCAATGAAATCATTGACCATTTATTAA
GTAATCAAGAACAATAAAAAAGATCTTAGAAAATCTTTTTCTTTTTTTTTTTGTTTAAAA
AAAAAAAAAAAAAAAAAAAAA
Length of 3' end seq. 371
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -