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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSH604
Library SS
(Link to library)
Clone ID SSH604
Atlas ID
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13416-1|Contig-U16394-1
Original site URL
Representative seq. ID SSH604P
(Link to Original site)
Representative DNA sequence 
>SSH604 (SSH604Q) /CSM/SS/SSH6-A/SSH604Q.Seq.d/
TACAAAATTAATTCTCCGTGTTAATGAATCAAGACTTAGATTATTTACAAGACAATTGTT
GGCCGAATTTTTTGGAACTTTATTTGTGGTATACATTGTGTCTGGTTCAACATTGGCAGC
CAACTTTGCAGTATCAGATCCAATAGTTAGAGTATTTCTAATTTGTCTTGTACAAGGTTT
TGCATTTGCAGCAATTATTTGGTCAATTTCGGGTATTTCAGGTTGTCAATTGAATCCAGC
GGTAACAGTTGGTTGTGTTACAACTGGTAGAATGGGAATTCTCAATGGTATAGCATTTAT
TATATTCCAATGTGTTGGTGCATTGGTTGGTGCAGGTATGATGAAAGXXXXXXXXXXTTT
CCCTTTTTGAAAAAGTTTTNNTAATTGTTGGCCCTTACANTGATTNCCTTGNANCACTTN
TGGTACTGCAACAAAATAAATTTATTAAACAACAAATTACCAAATAATAATAATAATAAT
AATAATAATAATAATAATTTTAATTTTAGCTCAATCATTTTAAAAATATTAAAAAATTAA
AAAAACTAAATGAATATTNGAAAATAAATCAATAAATAAATAAATTTTNTGAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAA
sequence update 1999. 1.17
Translated Amino Acid sequence 
TKLILRVNESRLRLFTRQLLAEFFGTLFVVYIVSGSTLAANFAVSDPIVRVFLICLVQGF
AFAAIIWSISGISGCQLNPAVTVGCVTTGRMGILNGIAFIIFQCVGALVGAGMMK---

---SLFEKVXXIVGPYXDXLXXLXVLQQNKFIKQQITK***********f*f*lnhfkni
kklkklneyxkinq*inkfxekkkkkkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
ykinspc**ikt*iiyktivgrifwnficgihcvwfnigsqlcsirsns*sisnlsctrf
cicsnylvnfgyfrlsiessgnswlcynw*ngnsqwysiyyipmcwcigwcryde---

---fpflkkfx*llaltxixlxhxwycnkinllnnklpnnnnnnnnnnnnfnfssiilki
lkn*kn*mnixk*ink*infxkkkkkkkkkkk

Frame B:
TKLILRVNESRLRLFTRQLLAEFFGTLFVVYIVSGSTLAANFAVSDPIVRVFLICLVQGF
AFAAIIWSISGISGCQLNPAVTVGCVTTGRMGILNGIAFIIFQCVGALVGAGMMK---

---fpf*ksfxncwplx*xpxxtxgtatk*iy*ttnyqiiiiiiiiiiiililaqsf*ky
*kikktk*ixenksink*ix*kkkkkkkkkkk

Frame C:
qn*fsvlmnqdldylqdncwpnflelylwytlclvqhwqptlqyqiq*leyf*fvlykvl
hlqqlfgqfrvfqvvn*iqr*qlvvlqlvewefsmv*hllysnvlvhwlvqv**k---

---SLFEKVXXIVGPYXDXLXXLXVLQQNKFIKQQITK***********f*f*lnhfkni
kklkklneyxkinq*inkfxekkkkkkkkkk
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSH604 (SSH604Q) /CSM/SS/SSH6-A/SSH604Q.Seq.d/                        815   0.0
SLJ252 (SLJ252Q) /CSM/SL/SLJ2-C/SLJ252Q.Seq.d/                        535   e-151
SSH526 (SSH526Q) /CSM/SS/SSH5-B/SSH526Q.Seq.d/                        236   3e-61
SSK331 (SSK331Q) /CSM/SS/SSK3-B/SSK331Q.Seq.d/                         76   7e-13
SSD740 (SSD740Q) /CSM/SS/SSD7-B/SSD740Q.Seq.d/                         76   7e-13
SSA732 (SSA732Q) /CSM/SS/SSA7-B/SSA732Q.Seq.d/                         76   7e-13
SHK677 (SHK677Q) /CSM/SH/SHK6-D/SHK677Q.Seq.d/                         38   0.16
FC-BT03 (FC-BT03Q) /CSM/FC/FC-BT/FC-BT03Q.Seq.d/                       38   0.16
CHK652 (CHK652Q) /CSM/CH/CHK6-C/CHK652Q.Seq.d/                         38   0.16
CHA767 (CHA767Q) /CSM/CH/CHA7-C/CHA767Q.Seq.d/                         38   0.16
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

U68246|U68246.1 Dictyostelium discoideum WacA (wacA) gene, complete cds.   680  0.0  3
BE578677|BE578677.1 rk16h04.y1 Meloidogyne javanica Egg SL1 Topo1 Kloek Chiapelli McCarter Meloidogyne javanica cDNA 5' similar to WP:T20G5.5 CE00479 HYPOTHETICAL 139.4 KD PROTEIN T20G5.5 IN CHROMOSOME III ;, mRNA sequence.    48  0.13  1
BH881005|BH881005.1 hv22f11.b1 WGS-ZmaysF (JM107 adapted methyl filtered) Zea mays genomic clone hv22f11 5', DNA sequence.    38  0.26  2
CC453329|CC453329.1 ZMMBBc0344P18r ZMMBBc Zea mays subsp. mays genomic clone ZMMBBc0344P18 3', DNA sequence.    46  0.51  1
BZ730664|BZ730664.1 OGFCN62TC ZM_0.7_1.5_KB Zea mays genomic clone ZMMBMa0256K04, DNA sequence.    46  0.51  1
BZ730670|BZ730670.1 OGFCN62TM ZM_0.7_1.5_KB Zea mays genomic clone ZMMBMa0256K04, DNA sequence.    46  0.51  1
AL355381|AL355381.11 Human DNA sequence from clone RP11-726A23 on chromosome X.    40  0.65  3
AL928799|AL928799.12 Zebrafish DNA sequence from clone CH211-15B10 in linkage group 7.    46  1.3  2
BH255395|BH255395.1 LDH10MCR100002G09f Mcr BC methy filtration maize leaf genomic shotgun library Zea mays genomic clone LDH10MCR100002G09f, DNA sequence.    36  1.8  2
BH255323|BH255323.1 LDH10MCR100001H06f Mcr BC methy filtration maize leaf genomic shotgun library Zea mays genomic clone LDH10MCR100001H06f, DNA sequence.    36  1.8  2
dna update 2003. 7.28
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF218314_1(AF218314|pid:none) Aedes aegypti aquaporin mRNA, comp...    59   8e-08
(Q25074) RecName: Full=Aquaporin; AltName: Full=Water channel 1;...    57   4e-07
AF020620_1(AF020620|pid:none) Bufo marinus aquaporin-1 homolog (...    57   4e-07
EU673709_1(EU673709|pid:none) Drosophila silvestris aquaporin-li...    57   5e-07
(Q9V5Z7) RecName: Full=Aquaporin;  &AE013599_1356(AE013599|pid:n...    54   3e-06
AB458833_1(AB458833|pid:none) Bombyx mori aqp mRNA for aquaporin...    54   5e-06
EU939753_1(EU939753|pid:none) Saccoglossus kowalevskii aquaporin...    52   1e-05
AB170709_1(AB170709|pid:none) Macaca fascicularis brain cDNA clo...    52   1e-05
AB292479_1(AB292479|pid:none) Amoeba proteus AQP gene for aquapo...    52   1e-05
AB073315_1(AB073315|pid:none) Hyla japonica mRNA for water chann...    52   2e-05
protein update 2009. 6.12
PSORT 

 psg: 0.59  gvh: 0.61  alm: 0.23  top: 0.47  tms: 0.20  mit: 0.43  mip: 0.15
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 32.0 %: endoplasmic reticulum
	 24.0 %: mitochondrial
	 24.0 %: plasma membrane
	  8.0 %: nuclear
	  4.0 %: vesicles of secretory system
	  4.0 %: Golgi
	  4.0 %: peroxisomal

>> prediction for SSH604 is end
5' end seq. ID SSH604F
5' end seq. 
>SSH604F.Seq
TACAAAATTAATTCTCCGTGTTAATGAATCAAGACTTAGATTATTTACAAGACAATTGTT
GGCCGAATTTTTTGGAACTTTATTTGTGGTATACATTGTGTCTGGTTCAACATTGGCAGC
CAACTTTGCAGTATCAGATCCAATAGTTAGAGTATTTCTAATTTGTCTTGTACAAGGTTT
TGCATTTGCAGCAATTATTTGGTCAATTTCGGGTATTTCAGGTTGTCAATTGAATCCAGC
GGTAACAGTTGGTTGTGTTACAACTGGTAGAATGGGAATTCTCAATGGTATAGCATTTAT
TATATTCCAATGTGTTGGTGCATTGGTTGGTGCAGGTATGATGAAAG----------
Length of 5' end seq. 347
3' end seq. ID SSH604Z
3' end seq. 
>SSH604Z.Seq
----------TTTCCCTTTTTGAAAAAGTTTTNNTAATTGTTGGCCCTTACANTGATTNC
CTTGNANCACTTNTGGTACTGCAACAAAATAAATTTATTAAACAACAAATTACCAAATAA
TAATAATAATAATAATAATAATAATAATAATTTTAATTTTAGCTCAATCATTTTAAAAAT
ATTAAAAAATTAAAAAAACTAAATGAATATTNGAAAATAAATCAATAAATAAATAAATTT
TNTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Length of 3' end seq. 268
Connected seq. ID SSH604P
Connected seq. 
>SSH604P.Seq
TACAAAATTAATTCTCCGTGTTAATGAATCAAGACTTAGATTATTTACAAGACAATTGTT
GGCCGAATTTTTTGGAACTTTATTTGTGGTATACATTGTGTCTGGTTCAACATTGGCAGC
CAACTTTGCAGTATCAGATCCAATAGTTAGAGTATTTCTAATTTGTCTTGTACAAGGTTT
TGCATTTGCAGCAATTATTTGGTCAATTTCGGGTATTTCAGGTTGTCAATTGAATCCAGC
GGTAACAGTTGGTTGTGTTACAACTGGTAGAATGGGAATTCTCAATGGTATAGCATTTAT
TATATTCCAATGTGTTGGTGCATTGGTTGGTGCAGGTATGATGAAAG----------TTT
CCCTTTTTGAAAAAGTTTTNNTAATTGTTGGCCCTTACANTGATTNCCTTGNANCACTTN
TGGTACTGCAACAAAATAAATTTATTAAACAACAAATTACCAAATAATAATAATAATAAT
AATAATAATAATAATAATTTTAATTTTAGCTCAATCATTTTAAAAATATTAAAAAATTAA
AAAAACTAAATGAATATTNGAAAATAAATCAATAAATAAATAAATTTTNTGAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAA
Length of connected seq. 615
Full length Seq ID -
Full length Seq. -
Length of full length seq. -