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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSH602
Library SS
(Link to library)
Clone ID SSH602
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13413-1
Original site URL
Representative seq. ID SSH602F
(Link to Original site)
Representative DNA sequence 
>SSH602 (SSH602Q) /CSM/SS/SSH6-A/SSH602Q.Seq.d/
CTTGTGGTGATAATAGTAAAATTTTTCAAGATATTCAAAATTTTATCCAAGATTATGACT
TAAATAAGGATTACAGTGTAACTTCATCTGAAATATATCAATCATTTTTAAAAAAAATGA
ATGGTGATAGTTTAAAGGCATCACAGGCAGCTGGTGTTTTATGTTCAACAGTTGATATGG
ACAATGATGGTAAATTCAGTTATTATGAAATTTCTAAATATTGTGCAGACCAGGCAAAAA
AACAAATTGAACAAAATGCTGAGACTGCTGCATTGGCTGATGTCGAAGCATTGTTATTAA
GACTTGATAAAXXXXXXXXXX
sequence update 1999. 1.17
Translated Amino Acid sequence 
CGDNSKIFQDIQNFIQDYDLNKDYSVTSSEIYQSFLKKMNGDSLKASQAAGVLCSTVDMD
NDGKFSYYEISKYCADQAKKQIEQNAETAALADVEALLLRLD---
Translated Amino Acid sequence (All Frames) 
Frame A:
lvviivkffkifkilskimt*iritv*lhlkyinhf*kk*mviv*rhhrqlvfyvqqliw
tmmvnsvimkflnivqtrqknklnkmlrllhwlmskhcy*dli---


Frame B:
lw****nfsryskfyprl*lk*glqcnfi*nisiifkknew**fkgitgswcfmfns*yg
q*w*iqll*nf*ilcrpgkktn*tkc*dccig*crsivikt**---


Frame C:
CGDNSKIFQDIQNFIQDYDLNKDYSVTSSEIYQSFLKKMNGDSLKASQAAGVLCSTVDMD
NDGKFSYYEISKYCADQAKKQIEQNAETAALADVEALLLRLD---
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSM254 (SSM254Q) /CSM/SS/SSM2-C/SSM254Q.Seq.d/                        527   e-149
SSJ723 (SSJ723Q) /CSM/SS/SSJ7-A/SSJ723Q.Seq.d/                        527   e-149
SSI258 (SSI258Q) /CSM/SS/SSI2-C/SSI258Q.Seq.d/                        527   e-149
SSH602 (SSH602Q) /CSM/SS/SSH6-A/SSH602Q.Seq.d/                        527   e-149
SSK215 (SSK215Q) /CSM/SS/SSK2-A/SSK215Q.Seq.d/                        519   e-147
SSM536 (SSM536Q) /CSM/SS/SSM5-B/SSM536Q.Seq.d/                        505   e-142
SSC684 (SSC684Q) /CSM/SS/SSC6-D/SSC684Q.Seq.d/                        505   e-142
SSF123 (SSF123Q) /CSM/SS/SSF1-A/SSF123Q.Seq.d/                        498   e-140
SSH174 (SSH174Q) /CSM/SS/SSH1-D/SSH174Q.Seq.d/                        480   e-135
SSD832 (SSD832Q) /CSM/SS/SSD8-B/SSD832Q.Seq.d/                        480   e-135
own update 2004.12.25
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AB070449|AB070449.1 Dictyostelium discoideum cbpG mRNA for calcium binding protein CBP7, complete cds, clone:SSM207.   234  e-150  3
AB070448|AB070448.1 Dictyostelium discoideum cbpF mRNA for calcium binding protein CBP6, complete cds, clone:SSA631.   137  4e-70  3
AF076972|AF076972.1 Dictyostelium discoideum calcium-binding protein mRNA, complete cds.   109  1e-40  3
BX511082|BX511082.2 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone  DKEY-7J20.    36  0.58  4
AL627254|AL627254.2 Zebrafish DNA sequence *** SEQUENCING CANCELLED *** from clone  RP71-1F6.    36  0.65  4
U58728|U58728.1 Caenorhabditis elegans cosmid C54H2.    34  1.4  3
AL929266|AL929266.8 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-67E16.    36  1.4  4
BX530089|BX530089.1 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-129M12.    36  1.7  3
AC109813|AC109813.1 Homo sapiens chromosome 4 clone RP13-601P19, WORKING DRAFT SEQUENCE, 1 unordered pieces.    34  2.4  5
AC136291|AC136291.1 Homo sapiens chromosome 11 clone CTD-2053N6 map 11, LOW-PASS SEQUENCE SAMPLING.    34  2.7  3
dna update 2003. 7.28
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54QT9) RecName: Full=Calcium-binding protein F; AltName: Full=...   161   6e-39
(Q54QU0) RecName: Full=Calcium-binding protein F-like; AltName: ...   160   1e-38
(Q54QT7) RecName: Full=Calcium-binding protein C; AltName: Full=...   140   1e-32
(Q966Q9) RecName: Full=Calcium-binding protein H; AltName: Full=...    48   1e-04
(Q2TBI5) RecName: Full=Calcineurin subunit B type 2; AltName: Fu...    40   0.019
AY336971_1(AY336971|pid:none) Xenopus laevis protein phospatase ...    39   0.055
AB375794_1(AB375794|pid:none) Bos taurus mRNA for calcineurin B,...    39   0.072
JC1220(JC1220) calcineurin regulatory chain, brain - mouse  &S43...    39   0.072
D14425_1(D14425|pid:none) Rattus sp. mRNA for calcineurin B, com...    39   0.072
CU640366_1300(CU640366|pid:none) Podospora anserina genomic DNA ...    38   0.094
protein update 2009. 6.12
PSORT 

 psg: 0.75  gvh: 0.41  alm: 0.48  top: 0.53  tms: 0.00  mit: 0.16  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 32.0 %: nuclear
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: endoplasmic reticulum

>> prediction for SSH602 is cyt
5' end seq. ID SSH602F
5' end seq. 
>SSH602F.Seq
CTTGTGGTGATAATAGTAAAATTTTTCAAGATATTCAAAATTTTATCCAAGATTATGACT
TAAATAAGGATTACAGTGTAACTTCATCTGAAATATATCAATCATTTTTAAAAAAAATGA
ATGGTGATAGTTTAAAGGCATCACAGGCAGCTGGTGTTTTATGTTCAACAGTTGATATGG
ACAATGATGGTAAATTCAGTTATTATGAAATTTCTAAATATTGTGCAGACCAGGCAAAAA
AACAAATTGAACAAAATGCTGAGACTGCTGCATTGGCTGATGTCGAAGCATTGTTATTAA
GACTTGATAAA----------
Length of 5' end seq. 311
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -