SSH596
Library SS
(Link to library)
Clone ID SSH596
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U10001-1
Original site URL
Representative seq. ID SSH596P
(Link to Original site)
Representative DNA sequence
>SSH596 (SSH596Q) /CSM/SS/SSH5-D/SSH596Q.Seq.d/
AATTTAAGTAATATTATATATATATATTATTCATATATATACCAATATATTTATATAAAA
AATGGAACAAGCAATTTTAAGAATTAATAATATATCTAGTCAATTAACAGGTAAATGTCC
ATTCAAAGCACATGGTGGTGGAGCAGGTAAATGTCCATATAAACTTGGTGGTGGACAAAT
TTTAGATCAAAGTAAAGCCTGGTCATTAGTTAATGTTACAGCAAATGTTGATCAAGTTAC
ACCAATTAAAGTATTAGTTACAGGAGCAGCAGGTCAAATTGCATATTCATTAATGTTTAT
GATTGCAAGTGGTCAAATGTTTGGACCACATCAACCAGTGATCTTACATTTATTXXXXXX
XXXXATCATCAGTTAATGATGATAAATGGTTAAATGAACAATTTATTCCATTAGTTCAAA
ATAGAGGTGCAACAGTTATTGCAGCAAGAAAATTATCATCAGCTGCTTCAGCTGCCAATG
CAATCGTTGGTCATGTTAGAGATTGGTTATTAGGTACTAAAGATGGTGAACATGTTTCAA
TGGCTGTTTATNCCGATGGTTCTTATAATGTNCCAAAAGGTTTAATCTTTTCATTCCCAG
TAACTTGTCATAATGGTCAATGGACAATCGTTCAAGGTTTAAAAATTAATTCTTCAACTC
AACAAAAAATAGATGCTACAATTAAAGAATTACAAGAAGAAAAAGAAACTGCTATGTCAT
TTTTAAATTAAACTTAAAAAAAATAAAAAAAATAAAAATTTTAAAATAAAAATAATTAAA
TAAATAAATAAATAAATAAATAAATAAAAAAAAAA
sequence update 1999. 1.18
Translated Amino Acid sequence
i*vilyiyiihiytnifi*KMEQAILRINNISSQLTGKCPFKAHGGGAGKCPYKLGGGQI
LDQSKAWSLVNVTANVDQVTPIKVLVTGAAGQIAYSLMFMIASGQMFGPHQPVILHL---

---SSVNDDKWLNEQFIPLVQNRGATVIAARKLSSAASAANAIVGHVRDWLLGTKDGEHV
SMAVYXDGSYNVPKGLIFSFPVTCHNGQWTIVQGLKINSSTQQKIDATIKELQEEKETAM
SFLN*t*kk*kk*kf*nknn*ink*ink*ikkk


Translated Amino Acid sequence (All Frames)
Frame A:
nlsniiyiyysyiyqyiyikngtsnfkn**yi*sinr*msiqstwwwsr*msi*twwwtn
frsk*slvis*cyskc*ssytn*sisyrssrsncifinvydckwsnvwttstsdltfi--
-

---iis****mvk*tiysissk*rcnsycskkiiiscfscqcnrwsc*rlviry*rw*tc
fngclxrwfl*cxkrfnlfipsnls*wsmdnrsrfkn*ffnstknrcyn*ritrrkrncy
vifklnlkkikkikilk*k*lnk*ink*inkkk

Frame B:
i*vilyiyiihiytnifi*KMEQAILRINNISSQLTGKCPFKAHGGGAGKCPYKLGGGQI
LDQSKAWSLVNVTANVDQVTPIKVLVTGAAGQIAYSLMFMIASGQMFGPHQPVILHL---

---SSVNDDKWLNEQFIPLVQNRGATVIAARKLSSAASAANAIVGHVRDWLLGTKDGEHV
SMAVYXDGSYNVPKGLIFSFPVTCHNGQWTIVQGLKINSSTQQKIDATIKELQEEKETAM
SFLN*t*kk*kk*kf*nknn*ink*ink*ikkk

Frame C:
fk*yyiyilfiyipiylykkwnkqf*eliiylvn*qvnvhskhmvveqvnvhinlvvdkf
*ikvkpgh*lmlqqmliklhqlky*lqeqqvklhih*cl*lqvvkcldhinq*syiy---

---hqlmming*mnnlfh*fkievqqllqqenyhqllqlpmqslvmleigy*vlkmvnmf
qwlfxpmvlimxqkv*sfhsq*lvimvngqsfkv*klilqlnkk*mlqlknykkkkkllc
hf*iklkknkknknfkikiik*ink*ink*kk

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSH596 (SSH596Q) /CSM/SS/SSH5-D/SSH596Q.Seq.d/ 1271 0.0
VFK667 (VFK667Q) /CSM/VF/VFK6-C/VFK667Q.Seq.d/ 718 0.0
AFI848 (AFI848Q) /CSM/AF/AFI8-B/AFI848Q.Seq.d/ 718 0.0
AFI745 (AFI745Q) /CSM/AF/AFI7-B/AFI745Q.Seq.d/ 718 0.0
SSK306 (SSK306Q) /CSM/SS/SSK3-A/SSK306Q.Seq.d/ 710 0.0
AFK292 (AFK292Q) /CSM/AF/AFK2-D/AFK292Q.Seq.d/ 710 0.0
VFL665 (VFL665Q) /CSM/VF/VFL6-C/VFL665Q.Seq.d/ 702 0.0
VFH705 (VFH705Q) /CSM/VF/VFH7-A/VFH705Q.Seq.d/ 702 0.0
AFJ250 (AFJ250Q) /CSM/AF/AFJ2-C/AFJ250Q.Seq.d/ 700 0.0
VFL380 (VFL380Q) /CSM/VF/VFL3-D/VFL380Q.Seq.d/ 694 0.0

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AZ672431|AZ672431.1 ENTMD91TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 74 9e-12 2
BH166705|BH166705.1 ENTSU36TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 74 1e-11 2
AF248632|AF248632.1 Entamoeba histolytica NAD-specific malate dehydrogenase 1 (Mdh1) gene, complete cds. 74 2e-11 2
AZ684282|AZ684282.1 ENTMV84TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 74 3e-09 1
AZ549943|AZ549943.1 ENTGT43TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 74 3e-09 1
BH130836|BH130836.1 ENTMY39TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 74 3e-09 1
AZ528199|AZ528199.1 ENTBY57TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 74 3e-09 1
BH154539|BH154539.1 ENTSE16TR Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 74 3e-09 1
BH157242|BH157242.1 ENTTR36TF Entamoeba histolytica Sheared DNA Entamoeba histolytica genomic, DNA sequence. 64 3e-06 1
AB113364|AB113364.1 Felis catus mdh mRNA for cytosolic malate dehydrogenase, complete cds. 46 3e-05 2
dna update 2003. 7.28
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54GE6) RecName: Full=Probable malate dehydrogenase 1; ... 213 4e-54
FB851933_1(FB851933|pid:none) Sequence 71206 from Patent WO20080... 133 6e-30
AJ843126_1(AJ843126|pid:none) Plantago major mRNA for malate deh... 133 8e-30
AY087986_1(AY087986|pid:none) Arabidopsis thaliana clone 40174 m... 132 1e-29
AJ299059_1(AJ299059|pid:none) Cicer arietinum mRNA for cytosolic... 131 2e-29
(Q7XDC8) RecName: Full=Malate dehydrogenase, cytoplasmic; ... 131 2e-29
FB851793_1(FB851793|pid:none) Sequence 71066 from Patent WO20080... 131 2e-29
FB851939_1(FB851939|pid:none) Sequence 71212 from Patent WO20080... 131 3e-29
EF144526_1(EF144526|pid:none) Populus trichocarpa clone PX0019_P... 130 4e-29
AC122161_21(AC122161|pid:none) Medicago truncatula clone mth2-11... 130 5e-29
protein update 2009. 6.12
PSORT

psg: 0.76 gvh: 0.42 alm: 0.37 top: 0.53 tms: 0.00 mit: 0.16 mip: 0.03
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.50 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

48.0 %: nuclear
32.0 %: cytoplasmic
8.0 %: mitochondrial
4.0 %: vesicles of secretory system
4.0 %: extracellular, including cell wall
4.0 %: endoplasmic reticulum

>> prediction for SSH596 is nuc

5' end seq. ID SSH596F
5' end seq.
>SSH596F.Seq
AATTTAAGTAATATTATATATATATATTATTCATATATATACCAATATATTTATATAAAA
AATGGAACAAGCAATTTTAAGAATTAATAATATATCTAGTCAATTAACAGGTAAATGTCC
ATTCAAAGCACATGGTGGTGGAGCAGGTAAATGTCCATATAAACTTGGTGGTGGACAAAT
TTTAGATCAAAGTAAAGCCTGGTCATTAGTTAATGTTACAGCAAATGTTGATCAAGTTAC
ACCAATTAAAGTATTAGTTACAGGAGCAGCAGGTCAAATTGCATATTCATTAATGTTTAT
GATTGCAAGTGGTCAAATGTTTGGACCACATCAACCAGTGATCTTACATTTATT------
----
Length of 5' end seq. 354
3' end seq. ID SSH596Z
3' end seq.
>SSH596Z.Seq
----------ATCATCAGTTAATGATGATAAATGGTTAAATGAACAATTTATTCCATTAG
TTCAAAATAGAGGTGCAACAGTTATTGCAGCAAGAAAATTATCATCAGCTGCTTCAGCTG
CCAATGCAATCGTTGGTCATGTTAGAGATTGGTTATTAGGTACTAAAGATGGTGAACATG
TTTCAATGGCTGTTTATNCCGATGGTTCTTATAATGTNCCAAAAGGTTTAATCTTTTCAT
TCCCAGTAACTTGTCATAATGGTCAATGGACAATCGTTCAAGGTTTAAAAATTAATTCTT
CAACTCAACAAAAAATAGATGCTACAATTAAAGAATTACAAGAAGAAAAAGAAACTGCTA
TGTCATTTTTAAATTAAACTTAAAAAAAATAAAAAAAATAAAAATTTTAAAATAAAAATA
ATTAAATAAATAAATAAATAAATAAATAAATAAAAAAAAAA
Length of 3' end seq. 451
Connected seq. ID SSH596P
Connected seq.
>SSH596P.Seq
AATTTAAGTAATATTATATATATATATTATTCATATATATACCAATATATTTATATAAAA
AATGGAACAAGCAATTTTAAGAATTAATAATATATCTAGTCAATTAACAGGTAAATGTCC
ATTCAAAGCACATGGTGGTGGAGCAGGTAAATGTCCATATAAACTTGGTGGTGGACAAAT
TTTAGATCAAAGTAAAGCCTGGTCATTAGTTAATGTTACAGCAAATGTTGATCAAGTTAC
ACCAATTAAAGTATTAGTTACAGGAGCAGCAGGTCAAATTGCATATTCATTAATGTTTAT
GATTGCAAGTGGTCAAATGTTTGGACCACATCAACCAGTGATCTTACATTTATT------
----ATCATCAGTTAATGATGATAAATGGTTAAATGAACAATTTATTCCATTAGTTCAAA
ATAGAGGTGCAACAGTTATTGCAGCAAGAAAATTATCATCAGCTGCTTCAGCTGCCAATG
CAATCGTTGGTCATGTTAGAGATTGGTTATTAGGTACTAAAGATGGTGAACATGTTTCAA
TGGCTGTTTATNCCGATGGTTCTTATAATGTNCCAAAAGGTTTAATCTTTTCATTCCCAG
TAACTTGTCATAATGGTCAATGGACAATCGTTCAAGGTTTAAAAATTAATTCTTCAACTC
AACAAAAAATAGATGCTACAATTAAAGAATTACAAGAAGAAAAAGAAACTGCTATGTCAT
TTTTAAATTAAACTTAAAAAAAATAAAAAAAATAAAAATTTTAAAATAAAAATAATTAAA
TAAATAAATAAATAAATAAATAAATAAAAAAAAAA
Length of connected seq. 805
Full length Seq ID -
Full length Seq. -
Length of full length seq. -