SSH574
Library SS
(Link to library)
Clone ID SSH574
Atlas ID -
NBRP ID
dictyBase ID
Link to Contig Contig-U03732-1
Original site URL
Representative seq. ID SSH574P
(Link to Original site)
Representative DNA sequence
>SSH574 (SSH574Q) /CSM/SS/SSH5-D/SSH574Q.Seq.d/
ATTTTTTCTGCCACTATTTATAACACATAATAATATTTTTAAAAAAAATATTATTTAATT
TATAATAATACAAATTAATTTTAGAAGTAATAATATATAGTTTTATTAATATTTTTATTT
CGTAATAATCAGAATAAAAAAACATCCTATTTATTAAAAAAAAAAAAACACACACTATAT
ATATAAAAAACTCTTATAAAATGTCAAAAGTTGCAGCACTTGGTTGGGGTACATTAGTTT
ACTTAGGCGTTGGTTTATTATTAGCAATTTACCCACCATTTGTTACAGATAAACCATTAG
GTCGTGTTTGCTTCATTACXXXXXXXXXXTAATAATAATATAATACACAAGAATAATAAA
ATCCAAAAAAACAACAAAATACTATTTTACAACCCCTGTTACATAAACGACTAAAAAAAA
AAAAATAAAAAAATAACAATAAAAAAAACATCAACACAAAAGGATACACATCAATGTGTA
TTCACCATCATCTCACCAACAACAACAACAACAACAACAACAACAACAACAACAACAACA
ACAACAACAACAACAAACTTATTACCTTTTAATCAAACAATTAAAAGGAACCACAAACTC
TATTTGAACGAAATAAGTAGTTATAAAAAAAAAATAAAAAAAAAACAAATAAAAAATTTT
AAAAAAAAAAAATTAAAAAA
sequence update 1999. 1.18
Translated Amino Acid sequence
ffchyl*hiiiflkkilfnl**yklileviiysfinifis**se*KNILFIKKKKTHTIY
IKNSYKMSKVAALGWGTLVYLGVGLLLAIYPPFVTDKPLGRVCFI---

---NNNIIHKNNKIQKNNKILFYNPCYIND*kkknkkitikktstqkdthqcvftiispt
ttttttttttttttttttnllpfnqtikrnhklylneissykkkikkkqiknfkkkklk


Translated Amino Acid sequence (All Frames)
Frame A:
ifsatiynt**yf*kkyyliynntn*f*k**yivlliflfrnnqnkktsyllkkkkhtly
i*ktlikcqklqhlvgvh*ft*alvyy*qfthhllqinh*vvfasl---

---***yntqe**npkkqqntilqpllhkrlkkkk*knnnkknintkgytsmcihhhltn
nnnnnnnnnnnnnnnnnnklitf*snn*kepqtlfernk*l*kknkkktnkkf*kkkikk

Frame B:
fflplfithnnifkknii*fiiiqinfrsnni*fy*yfyfviirikkhpiy*kkknthyi
ykkll*nvkscstwlgyisllrrwfiisnlpticyr*tirscllhy---

---NNNIIHKNNKIQKNNKILFYNPCYIND*kkknkkitikktstqkdthqcvftiispt
ttttttttttttttttttnllpfnqtikrnhklylneissykkkikkkqiknfkkkklk

Frame C:
ffchyl*hiiiflkkilfnl**yklileviiysfinifis**se*KNILFIKKKKTHTIY
IKNSYKMSKVAALGWGTLVYLGVGLLLAIYPPFVTDKPLGRVCFI---

---iii*ytriikskkttkyyfttpvt*ttkkkkikk*q*kkhqhkrihinvyspsshqq
qqqqqqqqqqqqqqqqqqtyyllikqlkgttnsi*tk*vvikkk*kknk*kilkkkn*k

Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSH574 (SSH574Q) /CSM/SS/SSH5-D/SSH574Q.Seq.d/ 383 e-105
SSF264 (SSF264Q) /CSM/SS/SSF2-C/SSF264Q.Seq.d/ 299 3e-80
SSE762 (SSE762Q) /CSM/SS/SSE7-C/SSE762Q.Seq.d/ 299 3e-80
SSE529 (SSE529Q) /CSM/SS/SSE5-B/SSE529Q.Seq.d/ 299 3e-80
SFK620 (SFK620Q) /CSM/SF/SFK6-A/SFK620Q.Seq.d/ 299 3e-80
VSF524 (VSF524Q) /CSM/VS/VSF5-A/VSF524Q.Seq.d/ 291 7e-78
SSH324 (SSH324Q) /CSM/SS/SSH3-A/SSH324Q.Seq.d/ 270 3e-71
VSC331 (VSC331Q) /CSM/VS/VSC3-B/VSC331Q.Seq.d/ 218 8e-56
SSJ222 (SSJ222Q) /CSM/SS/SSJ2-A/SSJ222Q.Seq.d/ 202 5e-51
SSA719 (SSA719Q) /CSM/SS/SSA7-A/SSA719Q.Seq.d/ 198 8e-50

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

BX072559|BX072559.10 Zebrafish DNA sequence from clone CH211-272F15 in linkage group 20. 42 0.38 2
BX005227|BX005227.3 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH211-286C23. 42 0.74 6
AL954738|AL954738.10 Mouse DNA sequence from clone RP23-327A15 on chromosome 2. 40 0.76 2
AX344551|AX344551.1 Sequence 2 from Patent WO0200932. 36 0.92 6
AC017102|AC017102.5 Homo sapiens chromosome 14 clone RP11-557H24, WORKING DRAFT SEQUENCE, 22 unordered pieces. 32 1.7 4
CC731956|CC731956.1 OGUEG42TH ZM_0.7_1.5_KB Zea mays genomic clone ZMMBMa0420H11, genomic survey sequence. 44 2.2 1
CA829106|CA829106.1 1114037F08.y2 1114 - Unigene IV from Maize Genome Project Zea mays cDNA, mRNA sequence. 44 2.2 1
CC731961|CC731961.1 OGUEG42TV ZM_0.7_1.5_KB Zea mays genomic clone ZMMBMa0420H11, genomic survey sequence. 44 2.2 1
BQ635598|BQ635598.1 1091069G10.y2 1091 - Immature ear with common ESTs screened by Schmidt lab Zea mays cDNA, mRNA sequence. 44 2.2 1
AE014822|AE014822.1 Plasmodium falciparum 3D7 chromosome 14 section 7 of 13 of the complete sequence. 38 2.4 6
dna update 2003. 7.28
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

(Q54DI5) RecName: Full=Uncharacterized protein DDB_G0292256; Fla... 49 1e-04

protein update 2009. 1.31
PSORT

psg: 0.66 gvh: 0.57 alm: 0.29 top: 0.30 tms: 0.07 mit: 0.29 mip: 0.00
nuc: 0.04 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.30 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

24.0 %: cytoplasmic
24.0 %: endoplasmic reticulum
16.0 %: mitochondrial
16.0 %: nuclear
12.0 %: Golgi
4.0 %: plasma membrane
4.0 %: vesicles of secretory system

>> prediction for SSH574 is cyt

5' end seq. ID SSH574F
5' end seq.
>SSH574F.Seq
ATTTTTTCTGCCACTATTTATAACACATAATAATATTTTTAAAAAAAATATTATTTAATT
TATAATAATACAAATTAATTTTAGAAGTAATAATATATAGTTTTATTAATATTTTTATTT
CGTAATAATCAGAATAAAAAAACATCCTATTTATTAAAAAAAAAAAAACACACACTATAT
ATATAAAAAACTCTTATAAAATGTCAAAAGTTGCAGCACTTGGTTGGGGTACATTAGTTT
ACTTAGGCGTTGGTTTATTATTAGCAATTTACCCACCATTTGTTACAGATAAACCATTAG
GTCGTGTTTGCTTCATTAC----------
Length of 5' end seq. 319
3' end seq. ID SSH574Z
3' end seq.
>SSH574Z.Seq
----------TAATAATAATATAATACACAAGAATAATAAAATCCAAAAAAACAACAAAA
TACTATTTTACAACCCCTGTTACATAAACGACTAAAAAAAAAAAAATAAAAAAATAACAA
TAAAAAAAACATCAACACAAAAGGATACACATCAATGTGTATTCACCATCATCTCACCAA
CAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAAACT
TATTACCTTTTAATCAAACAATTAAAAGGAACCACAAACTCTATTTGAACGAAATAAGTA
GTTATAAAAAAAAAATAAAAAAAAAACAAATAAAAAATTTTAAAAAAAAAAAATTAAAAA
A
Length of 3' end seq. 351
Connected seq. ID SSH574P
Connected seq.
>SSH574P.Seq
ATTTTTTCTGCCACTATTTATAACACATAATAATATTTTTAAAAAAAATATTATTTAATT
TATAATAATACAAATTAATTTTAGAAGTAATAATATATAGTTTTATTAATATTTTTATTT
CGTAATAATCAGAATAAAAAAACATCCTATTTATTAAAAAAAAAAAAACACACACTATAT
ATATAAAAAACTCTTATAAAATGTCAAAAGTTGCAGCACTTGGTTGGGGTACATTAGTTT
ACTTAGGCGTTGGTTTATTATTAGCAATTTACCCACCATTTGTTACAGATAAACCATTAG
GTCGTGTTTGCTTCATTAC----------TAATAATAATATAATACACAAGAATAATAAA
ATCCAAAAAAACAACAAAATACTATTTTACAACCCCTGTTACATAAACGACTAAAAAAAA
AAAAATAAAAAAATAACAATAAAAAAAACATCAACACAAAAGGATACACATCAATGTGTA
TTCACCATCATCTCACCAACAACAACAACAACAACAACAACAACAACAACAACAACAACA
ACAACAACAACAACAAACTTATTACCTTTTAATCAAACAATTAAAAGGAACCACAAACTC
TATTTGAACGAAATAAGTAGTTATAAAAAAAAAATAAAAAAAAAACAAATAAAAAATTTT
AAAAAAAAAAAATTAAAAAA
Length of connected seq. 670
Full length Seq ID -
Full length Seq. -
Length of full length seq. -