SSH565
Library SS
(Link to library)
Clone ID SSH565
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U09984-1
Original site URL
Representative seq. ID SSH565Z
(Link to Original site)
Representative DNA sequence
>SSH565 (SSH565Q) /CSM/SS/SSH5-C/SSH565Q.Seq.d/
XXXXXXXXXXCAGACATAAATTAGATGGTCTTTATGAATGTATTTTATGTGCTTGTTGTT
CAACCTCTTGTCCAAGTTATTGGTGGAGTGAAGGTGGTGATGGTGGTTATTTAGGTCCAG
CCGTCCTCTTACAAGCTTATCGTTGGATCGCTGATTCTCGTGATTCAATTCAAAAAGATA
GATTAGCAATCCTCTCTGAAGATCAAATGAAAGTTTACAAATGTCACACCATTATGAATT
GTACTGCTGTTTGTCCAAAAGGTTTAAATCCAGGTAAAAGTATTGCTAATATTAAATATT
TATTAGCACACAATTAATTTTTTTACCAATTAAACTTTATTTTATAAAAAAAACAAAACA
AAACAACATTCAAAAATAATAATAATAATAATAATAATAATAATAATAATTATTTTTTTA
AATAATAATTTTCATTTTAATTTAAATAATATAAATAATAATAATTATAACAAAATTAAA
AA
sequence update 1998. 9. 2
Translated Amino Acid sequence
---RHKLDGLYECILCACCSTSCPSYWWSEGGDGGYLGPAVLLQAYRWIADSRDSIQKDR
LAILSEDQMKVYKCHTIMNCTAVCPKGLNPGKSIANIKYLLAHN*ffyqlnfil*kkqnk
ttfknnnnnnnnnnnnyffk**fsf*fk*yk***l*qn*k


Translated Amino Acid sequence (All Frames)
Frame A:
---RHKLDGLYECILCACCSTSCPSYWWSEGGDGGYLGPAVLLQAYRWIADSRDSIQKDR
LAILSEDQMKVYKCHTIMNCTAVCPKGLNPGKSIANIKYLLAHN*ffyqlnfil*kkqnk
ttfknnnnnnnnnnnnyffk**fsf*fk*yk***l*qn*k


Frame B:
---din*mvfmnvfyvlvvqplvqviggvkvvmvvi*vqpssyklivgslilviqfkkid
*qsslkik*kftnvtpl*ivllfvqkv*iqvkvllilniy*htinfftn*tlfykknktk
qhskiiiiiiiiiiiiiflnnnfhfnlnninnnnynkik


Frame C:
---t*irwsl*myfmcllfnllskllve*rw*wwlfrssrpltslsldr*fs*fnskr*i
snpl*rsneslqmshhyelycclskrfksr*kyc*y*ifistqliflpiklyfikktkqn
niqk***********lff*iiifili*ii*iiiiitklk


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSA690 (VSA690Q) /CSM/VS/VSA6-D/VSA690Q.Seq.d/ 622 e-177
VFN649 (VFN649Q) /CSM/VF/VFN6-C/VFN649Q.Seq.d/ 622 e-177
VFJ293 (VFJ293Q) /CSM/VF/VFJ2-D/VFJ293Q.Seq.d/ 622 e-177
SSH565 (SSH565Q) /CSM/SS/SSH5-C/SSH565Q.Seq.d/ 622 e-177
AFI476 (AFI476Q) /CSM/AF/AFI4-D/AFI476Q.Seq.d/ 622 e-177
VFI723 (VFI723Q) /CSM/VF/VFI7-A/VFI723Q.Seq.d/ 599 e-170
SSK450 (SSK450Q) /CSM/SS/SSK4-C/SSK450Q.Seq.d/ 438 e-122
SSH675 (SSH675Q) /CSM/SS/SSH6-D/SSH675Q.Seq.d/ 333 1e-90
SSF464 (SSF464Q) /CSM/SS/SSF4-C/SSF464Q.Seq.d/ 333 1e-90
AFH631 (AFH631Q) /CSM/AF/AFH6-B/AFH631Q.Seq.d/ 238 6e-62

own update 2001.11.27
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AJ496288|AJ496288.1 Bartonella tribocorum succinate dehydrogenase operon (partial), type IV secretion system operon, ubiH, int and korB genes and ORF1 DNA. 72 1e-16 4
AF007261|AF007261.1 Reclinomonas americana mitochondrial DNA, complete genome. 76 1e-14 4
CB889664|CB889664.1 taa39f03.x3 Hydra EST -III Hydra magnipapillata cDNA 3' similar to TR:Q9YHT2 Q9YHT2 SUCCINATE DEHYDROGENASE IP SUBUNIT. ;, mRNA sequence. 60 7e-13 3
CD566402|CD566402.1 tac04h07.x1 Hydra EST -III Hydra magnipapillata cDNA 3' similar to SW:DHSB_HUMAN P21912 SUCCINATE DEHYDROGENASE [UBIQUINONE] IRON-SULFUR PROTEIN, MITOCHONDRIAL PRECURSOR ;, mRNA sequence. 60 8e-13 3
CD268263|CD268263.1 tab82b11.x1 Hydra EST -III Hydra magnipapillata cDNA 3' similar to SW:DHSB_HUMAN P21912 SUCCINATE DEHYDROGENASE [UBIQUINONE] IRON-SULFUR PROTEIN, MITOCHONDRIAL PRECURSOR ;, mRNA sequence. 60 9e-13 3
CD265961|CD265961.1 tab27b08.x1 Hydra EST -III Hydra magnipapillata cDNA 3' similar to SW:DHSB_HUMAN P21912 SUCCINATE DEHYDROGENASE [UBIQUINONE] IRON-SULFUR PROTEIN, MITOCHONDRIAL PRECURSOR ;, mRNA sequence. 60 9e-13 3
CB890949|CB890949.1 taa56d05.x1 Hydra EST -III Hydra magnipapillata cDNA 3' similar to SW:DHSB_HUMAN P21912 SUCCINATE DEHYDROGENASE [UBIQUINONE] IRON-SULFUR PROTEIN, MITOCHONDRIAL PRECURSOR ;, mRNA sequence. 60 1e-12 3
Z48930|Z48930.1 C.caldarium mitochondrial genes (10kb). 70 2e-12 5
BQ596432|BQ596432.1 PfESToab33g01.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to TR:Q94652 Q94652 IRON-SULFUR SUBUNIT OF SUCCINATE DEHYDROGENASE. ;, mRNA sequence. 52 6e-11 3
BI816352|BI816352.1 PfESToaa39d09.y1 Plasmodium falciparum 3D7 asexual cDNA Plasmodium falciparum cDNA 5' similar to TR:Q94652 Q94652 IRON-SULFUR SUBUNIT OF SUCCINATE DEHYDROGENASE. ;, mRNA sequence. 52 1e-10 3
dna update 2003. 7.28
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AK169839_1(AK169839|pid:none) Mus musculus 2 days neonate thymus... 151 6e-36
U17886_1(U17886|pid:none) Human succinate dehydrogenase iron-pro... 150 1e-35
CP000683_37(CP000683|pid:none) Rickettsia massiliae MTU5, comple... 150 1e-35
(P21912) RecName: Full=Succinate dehydrogenase [ubiquinone] iron... 150 1e-35
(Q3T189) RecName: Full=Succinate dehydrogenase [ubiquinone] iron... 150 1e-35
I38895(I38895;I38206;A34045;A32394) succinate dehydrogenase (ubi... 150 1e-35
(Q1RGP3) RecName: Full=Succinate dehydrogenase iron-sulfur subun... 150 1e-35
D10245_1(D10245|pid:none) Homo sapiens sdh B mRNA for succinate-... 150 1e-35
(P21913) RecName: Full=Succinate dehydrogenase [ubiquinone] iron... 150 1e-35
CP001612_50(CP001612|pid:none) Rickettsia africae ESF-5, complet... 150 1e-35
protein update 2009. 6.12
PSORT

psg: 0.92 gvh: 0.57 alm: 0.43 top: 0.30 tms: 0.00 mit: 0.22 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

32.0 %: cytoplasmic
28.0 %: nuclear
16.0 %: extracellular, including cell wall
8.0 %: vacuolar
8.0 %: endoplasmic reticulum
4.0 %: mitochondrial
4.0 %: vesicles of secretory system

>> prediction for SSH565 is cyt

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSH565Z
3' end seq.
>SSH565Z.Seq
----------CAGACATAAATTAGATGGTCTTTATGAATGTATTTTATGTGCTTGTTGTT
CAACCTCTTGTCCAAGTTATTGGTGGAGTGAAGGTGGTGATGGTGGTTATTTAGGTCCAG
CCGTCCTCTTACAAGCTTATCGTTGGATCGCTGATTCTCGTGATTCAATTCAAAAAGATA
GATTAGCAATCCTCTCTGAAGATCAAATGAAAGTTTACAAATGTCACACCATTATGAATT
GTACTGCTGTTTGTCCAAAAGGTTTAAATCCAGGTAAAAGTATTGCTAATATTAAATATT
TATTAGCACACAATTAATTTTTTTACCAATTAAACTTTATTTTATAAAAAAAACAAAACA
AAACAACATTCAAAAATAATAATAATAATAATAATAATAATAATAATAATTATTTTTTTA
AATAATAATTTTCATTTTAATTTAAATAATATAAATAATAATAATTATAACAAAATTAAA
AA
Length of 3' end seq. 472
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -