SSH553
Library SS
(Link to library)
Clone ID SSH553
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U16310-1
Original site URL
Representative seq. ID SSH553Z
(Link to Original site)
Representative DNA sequence
>SSH553 (SSH553Q) /CSM/SS/SSH5-C/SSH553Q.Seq.d/
XXXXXXXXXXGACTCAACCATCAAACAATTCCAATCTGTTGTTGAAAAATCATCATTCGT
TTCTTTCTTTACTGCTGCTTCTGCTCATGAATTTGATGTTCAAGCTACTTTCAACAAACA
AGTTGAACAATCATTTTTACAAGATGGTTCATCATCATTAAATTCAGCCAGCCAACAAGG
TAGTGGATCAAGTAGTTCAGGATCAAATGAACCAACTAAACAACATTTCACTTATGTTAC
TGGTCCAGTCCTTTCTGCTTATTTGATTATCTCAATCTTATTAGCCATTTTATTCACTGG
TATTTGTTGTATTTCTGATCTCCAAGTTCCAGATAGATACGAAGCACCAAAGAGCAAAGT
ACTTTAAAAAAAAAAAAATAATAAAAAATTAATACCAAATAATTTATAAAACAAATAAAA
TATGACATATAATAAAAAATAAAAAATAAACAAAAA
sequence update 1998. 1.30
Translated Amino Acid sequence
---STIKQFQSVVEKSSFVSFFTAASAHEFDVQATFNKQVEQSFLQDGSSSLNSASQQGS
GSSSSGSNEPTKQHFTYVTGPVLSAYLIISILLAILFTGICCISDLQVPDRYEAPKSKVL
*kkknnkklipnnl*nk*nmtynkk*kink


Translated Amino Acid sequence (All Frames)
Frame A:
---tqpsnnsnlllknhhsflsllllllmnlmfkllstnklnnhfykmvhhh*iqpankv
vdqvvqdqmnqlnnislmllvqsflli*lsqsy*pfyslvfvvfliskfqidtkhqraky
fkkkkiikn*yqiiyktnki*hiiknkk*tk


Frame B:
---lnhqtipicc*kiiirfflyccfcs*i*cssyfqqts*tiiftrwfiiikfsqptr*
wik*frik*tn*ttfhlcywsspfclfdylnlishfihwyllyf*spssr*irstkeqst
lkkkk**kintk*fikqikydi**kiknkqk


Frame C:
---STIKQFQSVVEKSSFVSFFTAASAHEFDVQATFNKQVEQSFLQDGSSSLNSASQQGS
GSSSSGSNEPTKQHFTYVTGPVLSAYLIISILLAILFTGICCISDLQVPDRYEAPKSKVL
*kkknnkklipnnl*nk*nmtynkk*kink


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

SSM106 (SSM106Q) /CSM/SS/SSM1-A/SSM106Q.Seq.d/ 704 0.0
SSL653 (SSL653Q) /CSM/SS/SSL6-C/SSL653Q.Seq.d/ 704 0.0
SSK743 (SSK743Q) /CSM/SS/SSK7-B/SSK743Q.Seq.d/ 704 0.0
SSK616 (SSK616Q) /CSM/SS/SSK6-A/SSK616Q.Seq.d/ 704 0.0
SSK603 (SSK603Q) /CSM/SS/SSK6-A/SSK603Q.Seq.d/ 704 0.0
SSK304 (SSK304Q) /CSM/SS/SSK3-A/SSK304Q.Seq.d/ 704 0.0
SSK290 (SSK290Q) /CSM/SS/SSK2-D/SSK290Q.Seq.d/ 704 0.0
SSI588 (SSI588Q) /CSM/SS/SSI5-D/SSI588Q.Seq.d/ 704 0.0
SSH553 (SSH553Q) /CSM/SS/SSH5-C/SSH553Q.Seq.d/ 704 0.0
SSH548 (SSH548Q) /CSM/SS/SSH5-B/SSH548Q.Seq.d/ 704 0.0

own update 2001.11.12
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

AC116330|AC116330.2 Dictyostelium discoideum chromosome 2 map 3191214-3323468 strain AX4, complete sequence. 505 0.0 2
AC123184|AC123184.4 Rattus norvegicus clone CH230-246F14, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces. 46 0.37 1
AC111943|AC111943.4 Rattus norvegicus clone CH230-207F15, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces. 46 0.37 1
AC128812|AC128812.3 Rattus norvegicus clone CH230-74E1, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces. 46 0.37 1
BZ237908|BZ237908.1 CH230-418F3.TJ CHORI-230 Segment 2 Rattus norvegicus genomic clone CH230-418F3, DNA sequence. 46 0.37 1
BZ280299|BZ280299.1 CH230-393O23.TJ CHORI-230 Segment 2 Rattus norvegicus genomic clone CH230-393O23, DNA sequence. 46 0.37 1
AC115411|AC115411.4 Rattus norvegicus clone CH230-207J17, *** SEQUENCING IN PROGRESS ***, 6 unordered pieces. 46 0.37 1
AC098920|AC098920.6 Rattus norvegicus clone CH230-201C23, WORKING DRAFT SEQUENCE, 5 unordered pieces. 44 1.5 1
AC133735|AC133735.2 Rattus norvegicus clone CH230-162F24, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces. 44 1.5 1
AX281481|AX281481.1 Sequence 145 from Patent WO0177376. 40 2.3 3
dna update 2003. 7.28
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AC116330_20(AC116330|pid:none) Dictyostelium discoideum chromoso... 106 2e-22
AE004091_3663(AE004091|pid:none) Pseudomonas aeruginosa PAO1, co... 32 6.7

protein update 2009. 1.31
PSORT

psg: 0.82 gvh: 0.54 alm: 0.14 top: 0.50 tms: 0.07 mit: 0.30 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

24.0 %: mitochondrial
20.0 %: endoplasmic reticulum
16.0 %: cytoplasmic
16.0 %: nuclear
12.0 %: Golgi
8.0 %: plasma membrane
4.0 %: vacuolar

>> prediction for SSH553 is mit

5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID SSH553Z
3' end seq.
>SSH553Z.Seq
----------GACTCAACCATCAAACAATTCCAATCTGTTGTTGAAAAATCATCATTCGT
TTCTTTCTTTACTGCTGCTTCTGCTCATGAATTTGATGTTCAAGCTACTTTCAACAAACA
AGTTGAACAATCATTTTTACAAGATGGTTCATCATCATTAAATTCAGCCAGCCAACAAGG
TAGTGGATCAAGTAGTTCAGGATCAAATGAACCAACTAAACAACATTTCACTTATGTTAC
TGGTCCAGTCCTTTCTGCTTATTTGATTATCTCAATCTTATTAGCCATTTTATTCACTGG
TATTTGTTGTATTTCTGATCTCCAAGTTCCAGATAGATACGAAGCACCAAAGAGCAAAGT
ACTTTAAAAAAAAAAAAATAATAAAAAATTAATACCAAATAATTTATAAAACAAATAAAA
TATGACATATAATAAAAAATAAAAAATAAACAAAAA
Length of 3' end seq. 446
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -