SSH552
Library SS
(Link to library)
Clone ID SSH552
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U13930-1
Original site URL
Representative seq. ID SSH552F
(Link to Original site)
Representative DNA sequence
>SSH552 (SSH552Q) /CSM/SS/SSH5-C/SSH552Q.Seq.d/
AAACAAATACAAATACAAAAAAAAAAAGTATTAATAAATAAATTAATAAATTTTTAATAA
ATAAATAAATAAAATAAATTAAAATGATTGCCAAAGTTTTCAAATCAATTACCCCAGAAT
CATACATTTTATTAGTCAACGCTGGTTTAATTTCAGCCTATGGTGTTAGAATTATTTTCC
AAAGTGTTAAAAACGATGAAGGTAAAGTCGATGAAAAAGCTCACATTGGTATTGGCCATT
TCTTCAAAAAGAGAGGTGCTCAACTTGTTGATGGAAAGAACTTAACCGATATTTAAAAXX
XXXXXXXX
sequence update 1999. 1.18
Translated Amino Acid sequence
tntntkkksink*inkflink*ik*IKMIAKVFKSITPESYILLVNAGLISAYGVRIIFQ
SVKNDEGKVDEKAHIGIGHFFKKRGAQLVDGKNLTDI*---


Translated Amino Acid sequence (All Frames)
Frame A:
kqiqiqkkkvlinklinf**ink*nklk*lpkfsnqlpqnhtfy*stlv*fqpmvlelfs
kvlktmkvksmkkltlvlaisskrevlnllmert*pifk---


Frame B:
nkykykkkky**in**ifnk*inkin*ndcqsfqinypriihfisqrwfnfslwc*nyfp
kc*kr*r*sr*ksshwywpflqkercstc*wkelnryl---


Frame C:
tntntkkksink*inkflink*ik*IKMIAKVFKSITPESYILLVNAGLISAYGVRIIFQ
SVKNDEGKVDEKAHIGIGHFFKKRGAQLVDGKNLTDI*---


Homology vs CSM-cDNA

Score E
Sequences producing significant alignments: (bits) Value

VSJ463 (VSJ463Q) /CSM/VS/VSJ4-C/VSJ463Q.Seq.d/ 422 e-117
VSJ129 (VSJ129Q) /CSM/VS/VSJ1-B/VSJ129Q.Seq.d/ 422 e-117
VSE506 (VSE506Q) /CSM/VS/VSE5-A/VSE506Q.Seq.d/ 422 e-117
SSH552 (SSH552Q) /CSM/SS/SSH5-C/SSH552Q.Seq.d/ 422 e-117
SSK415 (SSK415Q) /CSM/SS/SSK4-A/SSK415Q.Seq.d/ 418 e-116
VSG687 (VSG687Q) /CSM/VS/VSG6-D/VSG687Q.Seq.d/ 396 e-110
AFG425 (AFG425Q) /CSM/AF/AFG4-B/AFG425Q.Seq.d/ 391 e-108
VSG693 (VSG693Q) /CSM/VS/VSG6-D/VSG693Q.Seq.d/ 387 e-107
VSJ179 (VSJ179Q) /CSM/VS/VSJ1-D/VSJ179Q.Seq.d/ 385 e-106
VSI809 (VSI809Q) /CSM/VS/VSI8-A/VSI809Q.Seq.d/ 385 e-106

own update 2004.12.25
Homology vs DNA

Score E
Sequences producing significant alignments: (bits) Value N

BU107696|BU107696.1 603112663F1 CSEQCHL12 Gallus gallus cDNA clone ChEST61n15 5', mRNA sequence. 44 0.96 1
AC111635|AC111635.4 Rattus norvegicus clone CH230-97P19, *** SEQUENCING IN PROGRESS ***, 1 ordered piece. 44 0.96 1
BU355481|BU355481.1 603474407F1 CSEQCHN70 Gallus gallus cDNA clone ChEST355n1 5', mRNA sequence. 44 0.96 1
AC105706|AC105706.3 Rattus norvegicus chromosome 18 clone CH230-69D15, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces. 44 0.96 1
AZ148097|AZ148097.1 SP_0047_A1_C09_SP6E Strongylocentrotus purpuratus, purple sea urchin, sperm genomic BAC library Strongylocentrotus purpuratus genomic clone Plate=47 Col=17 Row=E, DNA sequence. 30 3.4 3
BZ780622|BZ780622.1 ii18b05.g1 WGS-SbicolorF (DH5a methyl filtered) Sorghum bicolor genomic clone ii18b05, DNA sequence. 36 4.1 2
AC020609|AC020609.11 Homo sapiens chromosome 12 clone RP11-939M18, WORKING DRAFT SEQUENCE, 20 unordered pieces. 38 6.0 3
AC106521|AC106521.3 Rattus norvegicus clone CH230-29H24, *** SEQUENCING IN PROGRESS ***, 3 unordered pieces. 40 15 1
AC118076|AC118076.6 Rattus norvegicus clone CH230-149P20, *** SEQUENCING IN PROGRESS ***, 1 ordered piece. 40 15 1
CB006624|CB006624.1 VVC035H11_139418 An expressed sequence tag database for abiotic stressed berries of Vitis vinifera var. Chardonnay Vitis vinifera cDNA clone VVC035H11 5, mRNA sequence. 40 15 1
dna update 2003. 7.28
Homology vs Protein

Score E
Sequences producing significant alignments: (bits) Value

AB292732_1(AB292732|pid:none) Dictyostelium discoideum srsA mRNA... 81 1e-14

protein update 2009. 1.31
PSORT

psg: 0.75 gvh: 0.61 alm: 0.32 top: 0.53 tms: 0.00 mit: 0.31 mip: 0.06
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: cytoplasmic
40.0 %: nuclear
16.0 %: mitochondrial
4.0 %: vesicles of secretory system

>> prediction for SSH552 is cyt

5' end seq. ID SSH552F
5' end seq.
>SSH552F.Seq
AAACAAATACAAATACAAAAAAAAAAAGTATTAATAAATAAATTAATAAATTTTTAATAA
ATAAATAAATAAAATAAATTAAAATGATTGCCAAAGTTTTCAAATCAATTACCCCAGAAT
CATACATTTTATTAGTCAACGCTGGTTTAATTTCAGCCTATGGTGTTAGAATTATTTTCC
AAAGTGTTAAAAACGATGAAGGTAAAGTCGATGAAAAAGCTCACATTGGTATTGGCCATT
TCTTCAAAAAGAGAGGTGCTCAACTTGTTGATGGAAAGAACTTAACCGATATTTAAAA--
--------
Length of 5' end seq. 298
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID -
Full length Seq. -
Length of full length seq. -