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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
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SSH550
Library SS
(Link to library)
Clone ID SSH550
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U15330-1
Original site URL
Representative seq. ID SSH550E
(Link to Original site)
Representative DNA sequence 
>SSH550 (SSH550Q) /CSM/SS/SSH5-C/SSH550Q.Seq.d/
CGAATTAATTGGTGGTATAGATAAATATATTTCCGTTTGCCGTGGTTGCTACAATAGTGA
TCAAAATGAAGGAAATAGTACCAAACCAAGCAAAACCGCACGTCATTCTCATTCTCAAAG
CGCACCATCCGTTGCTCCACTTGCTGTAAACATTAATCCTGATGATCATTTAAATAATGA
TTATTAATTATGAAGATCCTAATTATATTTGTACATTATAAATTATAATCAAAAAAAAAA
AAAAAAAAATCCAGGAAA
sequence update 1998. 1.30
Translated Amino Acid sequence 
ELIGGIDKYISVCRGCYNSDQNEGNSTKPSKTARHSHSQSAPSVAPLAVNINPDDHLNND
Y*l*rs*lylyiinynqkkkkknpg
Translated Amino Acid sequence (All Frames) 
Frame A:
rinwwyr*iyfrlpwllq**sk*rk*yqtkqnrtsfsfskrtircstcckh*s**sfk**
llimkiliifvhykl*skkkkkksrk


Frame B:
ELIGGIDKYISVCRGCYNSDQNEGNSTKPSKTARHSHSQSAPSVAPLAVNINPDDHLNND
Y*l*rs*lylyiinynqkkkkknpg


Frame C:
n*lvv*inifpfavvativikmkeivpnqakphvililkahhpllhll*tlilmii*imi
inyedpnyictl*iiikkkkkkiqe
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSL615 (SSL615Q) /CSM/SS/SSL6-A/SSL615Q.Seq.d/                        456   e-128
SSL455 (SSL455Q) /CSM/SS/SSL4-C/SSL455Q.Seq.d/                        456   e-128
SSH550 (SSH550Q) /CSM/SS/SSH5-C/SSH550Q.Seq.d/                        456   e-128
SSH134 (SSH134Q) /CSM/SS/SSH1-B/SSH134Q.Seq.d/                        456   e-128
SSF887 (SSF887Q) /CSM/SS/SSF8-D/SSF887Q.Seq.d/                        456   e-128
SSF620 (SSF620Q) /CSM/SS/SSF6-A/SSF620Q.Seq.d/                        456   e-128
SSE604 (SSE604Q) /CSM/SS/SSE6-A/SSE604Q.Seq.d/                        456   e-128
SSE242 (SSE242Q) /CSM/SS/SSE2-B/SSE242Q.Seq.d/                        456   e-128
SSD279 (SSD279Q) /CSM/SS/SSD2-D/SSD279Q.Seq.d/                        456   e-128
SSC741 (SSC741Q) /CSM/SS/SSC7-B/SSC741Q.Seq.d/                        456   e-128
own update 2001.11.12
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AF510846|AF510846.1 Dictyostelium discoideum calmodulin-binding protein ThyB (thyB) mRNA, complete cds.   456  e-125  1
U61990|U61990.1 Dictyostelium discoideum ThyB (thyB) mRNA, complete cds.   400  e-108  1
BX088727|BX088727.7 Zebrafish DNA sequence *** SEQUENCING IN PROGRESS *** from clone DKEY-218A22.    32  0.23  7
BH973506|BH973506.1 odi29h07.b1 B.oleracea002 Brassica oleracea genomic, DNA sequence.    40  0.28  2
BI639194|BI639194.1 SD21708.5prime SD Drosophila melanogaster Schneider L2 cell culture pOT2 Drosophila melanogaster cDNA clone SD21708 5, mRNA sequence.    32  0.33  3
AI531016|AI531016.1 SD01870.5prime SD Drosophila melanogaster Schneider L2 cell culture pOT2 Drosophila melanogaster cDNA clone SD01870 5prime, mRNA sequence.    32  0.34  3
AC100770|AC100770.2 Homo sapiens chromosome 11, clone RP11-46P12, complete sequence.    42  0.77  2
AC090592|AC090592.5 Homo sapiens chromosome 11, clone RP11-405K6, complete sequence.    42  0.79  2
AC025235|AC025235.4 Homo sapiens chromosome 11 clone RP11-405K6, WORKING DRAFT SEQUENCE, 18 unordered pieces.    42  0.79  2
BD048929|BD048929.1 Sequence tag and encoded human protein.       44  0.79  1
dna update 2003. 7.28
Homology vs Protein 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY192987_1(AY192987|pid:none) Danio rerio thymidine kinase 1 (TK...    36   0.37
BT077033_1(BT077033|pid:none) Caligus rogercresseyi clone crog-e...    35   1.1
FJ853599_1(FJ853599|pid:none) Anolis carolinensis thymidine kina...    34   1.8
(P23335) RecName: Full=Thymidine kinase;          EC=2.7.1.21;  ...    34   1.8
AF395663_1(AF395663|pid:none) Trypanosoma brucei thymidine kinas...    34   1.8
FJ410446_1(FJ410446|pid:none) Betula luminifera cellulose syntha...    34   1.8
AF410153_63(AF410153|pid:none) Swinepox virus isolate 17077-99, ...    34   1.8
CT005260_144(CT005260|pid:none) Leishmania major strain Friedlin...    33   2.4
M11945_1(M11945|pid:none) Mouse cytosolic thymidine kinase mRNA ...    33   2.4
EU072120_1(EU072120|pid:none) Leishmania donovani strain Lo8 thy...    33   2.4
protein update 2009. 7. 7
PSORT 

 psg: 0.75  gvh: 0.37  alm: 0.54  top: 0.53  tms: 0.00  mit: 0.11  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 24.0 %: cytoplasmic
	 16.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for SSH550 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SSH550E
Full length Seq. 
>SSH550E.Seq
CGAATTAATTGGTGGTATAGATAAATATATTTCCGTTTGCCGTGGTTGCTACAATAGTGA
TCAAAATGAAGGAAATAGTACCAAACCAAGCAAAACCGCACGTCATTCTCATTCTCAAAG
CGCACCATCCGTTGCTCCACTTGCTGTAAACATTAATCCTGATGATCATTTAAATAATGA
TTATTAATTATGAAGATCCTAATTATATTTGTACATTATAAATTATAATCAAAAAAAAAA
AAAAAAAAATCCAGGAAA
Length of full length seq. 258