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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
SSH543
Library SS
(Link to library)
Clone ID SSH543
Atlas ID -
NBRP ID -
dictyBase ID -
Link to Contig Contig-U05038-1
Original site URL
Representative seq. ID SSH543E
(Link to Original site)
Representative DNA sequence 
>SSH543 (SSH543Q) /CSM/SS/SSH5-B/SSH543Q.Seq.d/
ATTTTTTTTTTTTAAATAAAAATCCTTTCTTTTCAATTGAAAACATTGTTGTGTGGCTAT
TTTAAAATATTAATATAGTAATTTTTTAAAACCTATTTTTTAAAAGTTTCNCCATTTCAA
GATTTGGACACGCATTNGAATCAGATTCCCAATATATTTTTCAATTTTTTTATTATTATT
CCCACCCTATTATCCATTTATAAATTATTTTTAATTTTTTTTTAAAAAATTTATTTTAAA
ATTAAAAAAAAAAAAAAAAAAGAAAAAAAAAAACACACACACACACAACTTTTTTTTTAA
TTTAATTTATTTTATATTTATTAAAAAAAAAAAAAAAAAAAAAAGTTATATTG
sequence update 1998. 1.30
Translated Amino Acid sequence 
ifff*ikilsfqlktllcgyfkili**FFKTYFLKVSPFQDLDTHXNQIPNIFFNFFIII
PTLLSIYKLFLIFF*kiyfkikkkkkkekkkhthtqlff*fnlfyiy*kkkkkkkly
Translated Amino Acid sequence (All Frames) 
Frame A:
ifff*ikilsfqlktllcgyfkili**FFKTYFLKVSPFQDLDTHXNQIPNIFFNFFIII
PTLLSIYKLFLIFF*kiyfkikkkkkkekkkhthtqlff*fnlfyiy*kkkkkkkly


Frame B:
ffffk*ksflfn*khccvailky*ysnflkpif*kfxhfkiwtrixirfpiyfsiflllf
ppyypfinyf*fffkkfilklkkkkkkkkknththnfffnliyfifikkkkkkksyi


Frame C:
ffflnknpffsienivvwlf*ninivif*nlffksfxisrfghaxesdsqyifqffyyys
hpiihl*iifnfflknlf*n*kkkkkrkkkththttffli*filyllkkkkkkkvil
Homology vs CSM-cDNA 

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SSH543 (SSH543Q) /CSM/SS/SSH5-B/SSH543Q.Seq.d/                        349   2e-95
SSE661 (SSE661Q) /CSM/SS/SSE6-C/SSE661Q.Seq.d/                        291   4e-78
SLF166 (SLF166Q) /CSM/SL/SLF1-C/SLF166Q.Seq.d/                         40   0.022
SFI781 (SFI781Q) /CSM/SF/SFI7-D/SFI781Q.Seq.d/                         40   0.022
VSI386 (VSI386Q) /CSM/VS/VSI3-D/VSI386Q.Seq.d/                         38   0.086
VSG675 (VSG675Q) /CSM/VS/VSG6-D/VSG675Q.Seq.d/                         38   0.086
VFN111 (VFN111Q) /CSM/VF/VFN1-A/VFN111Q.Seq.d/                         38   0.086
VFL512 (VFL512Q) /CSM/VF/VFL5-A/VFL512Q.Seq.d/                         38   0.086
SSK784 (SSK784Q) /CSM/SS/SSK7-D/SSK784Q.Seq.d/                         38   0.086
SSK247 (SSK247Q) /CSM/SS/SSK2-B/SSK247Q.Seq.d/                         38   0.086
own update 2004. 6. 1
Homology vs DNA 

                                                               Score     E
Sequences producing significant alignments:                    (bits)  Value  N

AC115607|AC115607.2 Dictyostelium discoideum chromosome 2 map 4559693-4624405 strain AX4, complete sequence.   287  e-101  6
AE014839|AE014839.1 Plasmodium falciparum 3D7 chromosome 11 section 4 of 8 of the complete sequence.    36  8e-05  12
AC117072|AC117072.2 Dictyostelium discoideum chromosome 2 map 3323568-3470138 strain AX4, complete sequence.    38  2e-04  10
AX346421|AX346421.1 Sequence 1492 from Patent WO0200928.          38  3e-04  5
AL831792|AL831792.6 Mouse DNA sequence from clone RP23-379L17 on chromosome 4.    48  0.001  3
AC068975|AC068975.3 Homo sapiens chromosome 6 clone RP11-659P12, WORKING DRAFT SEQUENCE, 6 unordered pieces.    36  0.001  9
AX344561|AX344561.1 Sequence 12 from Patent WO0200932.            36  0.002  11
AL031744|AL031744.8 Plasmodium falciparum DNA from MAL1P1.        42  0.002  9
AC116551|AC116551.2 Dictyostelium discoideum chromosome 2 map complement(581327-427576) strain AX4, complete sequence.    34  0.002  9
AX346929|AX346929.1 Sequence 2000 from Patent WO0200928.          42  0.004  5
dna update 2003. 7.28
Homology vs Protein 

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 214,703,392
protein update 2009. 7. 7
PSORT 

 psg: 0.62  gvh: 0.47  alm: 0.26  top: 0.63  tms: 0.07  mit: 0.26  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.26  leu: 0.26  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 48.0 %: nuclear
	 28.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  8.0 %: Golgi
	  4.0 %: vesicles of secretory system

>> prediction for SSH543 is nuc
5' end seq. ID -
5' end seq. -
Length of 5' end seq. -
3' end seq. ID -
3' end seq. -
Length of 3' end seq. -
Connected seq. ID -
Connected seq. -
Length of connected seq. -
Full length Seq ID SSH543E
Full length Seq. 
>SSH543E.Seq
ATTTTTTTTTTTTAAATAAAAATCCTTTCTTTTCAATTGAAAACATTGTTGTGTGGCTAT
TTTAAAATATTAATATAGTAATTTTTTAAAACCTATTTTTTAAAAGTTTCNCCATTTCAA
GATTTGGACACGCATTNGAATCAGATTCCCAATATATTTTTCAATTTTTTTATTATTATT
CCCACCCTATTATCCATTTATAAATTATTTTTAATTTTTTTTTAAAAAATTTATTTTAAA
ATTAAAAAAAAAAAAAAAAAAGAAAAAAAAAAACACACACACACACAACTTTTTTTTTAA
TTTAATTTATTTTATATTTATTAAAAAAAAAAAAAAAAAAAAAAGTTATATTG
Length of full length seq. 353